Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra000436.1-P | Field mustard | nucleus | 71.39 | 73.51 |
| CDY66254 | Canola | nucleus | 70.19 | 73.0 |
| CDX83349 | Canola | nucleus | 70.67 | 72.77 |
| CDX80064 | Canola | nucleus | 69.71 | 72.5 |
| Bra004489.1-P | Field mustard | nucleus | 69.47 | 72.25 |
| CDY50911 | Canola | nucleus | 46.39 | 71.22 |
| AT3G62090.2 | Thale cress | nucleus | 41.11 | 47.11 |
| VIT_07s0005g02510.t01 | Wine grape | nucleus | 13.46 | 28.0 |
| KRH69138 | Soybean | cytosol, nucleus, vacuole | 11.3 | 26.11 |
| AT5G67110.1 | Thale cress | nucleus | 12.26 | 24.29 |
| KRH33663 | Soybean | nucleus | 22.6 | 20.94 |
| AT2G20180.2 | Thale cress | nucleus | 22.6 | 19.67 |
| AT4G00050.1 | Thale cress | nucleus | 18.51 | 19.3 |
| AT5G58010.1 | Thale cress | nucleus | 13.7 | 19.19 |
| KRH68348 | Soybean | nucleus | 23.08 | 18.57 |
| TraesCS1B01G100400.2 | Wheat | nucleus | 22.12 | 18.33 |
| KRG96615 | Soybean | nucleus | 22.6 | 18.15 |
| TraesCS1D01G084200.1 | Wheat | nucleus | 21.88 | 18.13 |
| AT4G36930.1 | Thale cress | nucleus | 16.11 | 17.96 |
| TraesCS1A01G083000.1 | Wheat | nucleus | 21.88 | 17.95 |
| HORVU1Hr1G017900.1 | Barley | nucleus | 20.91 | 17.65 |
| Zm00001d024783_P001 | Maize | nucleus | 21.15 | 17.43 |
| Os05t0139100-01 | Rice | nucleus | 20.91 | 17.23 |
| AT1G09530.3 | Thale cress | nucleus | 21.39 | 16.98 |
| AT4G28790.1 | Thale cress | nucleus | 16.83 | 16.95 |
| AT3G59060.2 | Thale cress | nucleus | 17.79 | 16.67 |
| Zm00001d040536_P005 | Maize | nucleus | 22.6 | 16.58 |
| AT2G43010.5 | Thale cress | extracellular, vacuole | 18.75 | 16.53 |
| AT4G28815.1 | Thale cress | vacuole | 12.02 | 16.29 |
| AT4G28800.2 | Thale cress | nucleus | 17.79 | 16.19 |
| KXG32305 | Sorghum | nucleus | 22.6 | 15.56 |
| GSMUA_Achr1P19000_001 | Banana | mitochondrion, nucleus | 21.88 | 15.35 |
| AT4G28811.1 | Thale cress | nucleus | 19.95 | 15.26 |
| Os01t0286100-01 | Rice | nucleus | 23.32 | 15.23 |
| AT2G24260.1 | Thale cress | nucleus | 12.5 | 14.86 |
| AT4G02590.1 | Thale cress | nucleus | 11.06 | 14.84 |
| Zm00001d008205_P001 | Maize | nucleus | 22.36 | 14.58 |
| PGSC0003DMT400047079 | Potato | nucleus | 24.76 | 14.55 |
| AT4G30980.2 | Thale cress | nucleus, plastid | 12.26 | 14.25 |
| Solyc01g102300.2.1 | Tomato | nucleus | 24.28 | 14.13 |
| KXG21255 | Sorghum | nucleus | 23.32 | 14.1 |
| AT1G03040.3 | Thale cress | nucleus | 10.82 | 13.51 |
Protein Annotations
| MapMan:15.5.32 | Gene3D:4.10.280.10 | EntrezGene:819311 | UniProt:A0A178VNL3 | ProteinID:AAC34226.1 | EMBL:AB090873 |
| ProteinID:AEC10779.1 | ArrayExpress:AT2G46970 | EnsemblPlantsGene:AT2G46970 | RefSeq:AT2G46970 | TAIR:AT2G46970 | RefSeq:AT2G46970-TAIR-G |
| EnsemblPlants:AT2G46970.1 | TAIR:AT2G46970.1 | EMBL:AY219127 | EMBL:AY954840 | Unigene:At.36425 | ncoils:Coil |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 |
| GO:GO:0006355 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009628 | GO:GO:0009641 | GO:GO:0009987 | GO:GO:0010017 | GO:GO:0046983 | InterPro:HLH_DNA-bd_sf |
| InterPro:IPR011598 | InterPro:IPR036638 | RefSeq:NP_182220.2 | ProteinID:OAP07384.1 | PFAM:PF00010 | Symbol:PIL1 |
| PFscan:PS50888 | PANTHER:PTHR12565 | PANTHER:PTHR12565:SF194 | UniProt:Q8L5W8 | SMART:SM00353 | SUPFAM:SSF47459 |
| UniParc:UPI00000A735D | InterPro:bHLH_dom | SEG:seg | : | : | : |
Description
PIL1Transcription factor PIL1 [Source:UniProtKB/Swiss-Prot;Acc:Q8L5W8]
Coordinates
chr2:-:19295431..19297858
Molecular Weight (calculated)
46582.3 Da
IEP (calculated)
9.440
GRAVY (calculated)
-0.788
Length
416 amino acids
Sequence
(BLAST)
(BLAST)
001: MEAKPLASSS SEPNMISPSS NIKPKLKDED YMELVCENGQ ILAKIRRPKN NGSFQKQRRQ SLLDLYETEY SEGFKKNIKI LGDTQVVPVS QSKPQQDKET
101: NEQMNNNKKK LKSSKIEFER NVSKSNKCVE SSTLIDVSAK GPKNVEVTTA PPDEQSAAVG RSTELYFASS SKFSRGTSRD LSCCSLKRKY GDIEEEESTY
201: LSNNSDDESD DAKTQVHART RKPVTKRKRS TEVHKLYERK RRDEFNKKMR ALQDLLPNCY KDDKASLLDE AIKYMRTLQL QVQMMSMGNG LIRPPTMLPM
301: GHYSPMGLGM HMGAAATPTS IPQFLPMNVQ ATGFPGMNNA PPQMLSFLNH PSGLIPNTPI FSPLENCSQP FVVPSCVSQT QATSFTQFPK SASASNLEDA
401: MQYRGSNGFS YYRSPN
101: NEQMNNNKKK LKSSKIEFER NVSKSNKCVE SSTLIDVSAK GPKNVEVTTA PPDEQSAAVG RSTELYFASS SKFSRGTSRD LSCCSLKRKY GDIEEEESTY
201: LSNNSDDESD DAKTQVHART RKPVTKRKRS TEVHKLYERK RRDEFNKKMR ALQDLLPNCY KDDKASLLDE AIKYMRTLQL QVQMMSMGNG LIRPPTMLPM
301: GHYSPMGLGM HMGAAATPTS IPQFLPMNVQ ATGFPGMNNA PPQMLSFLNH PSGLIPNTPI FSPLENCSQP FVVPSCVSQT QATSFTQFPK SASASNLEDA
401: MQYRGSNGFS YYRSPN
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.