Factsheet for AT2G43010.5

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, vacuole

Predictor Summary:

extracellular 4
endoplasmic reticulum 3
vacuole 4
plasma membrane 3
golgi 3
nucleus 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, vacuole
Any Predictor:	mitochondrion, nucleus, secretory
BaCelLo:	secretory
EpiLoc:	nucleus
iPSORT:	mitochondrion
MultiLoc:	extracellular
Plant-mPloc:	nucleus
Predotar:	mitochondrion
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	vacuole

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY30375	Canola	nucleus	67.8	78.82
Bra037742.1-P	Field mustard	nucleus	67.8	78.82
Bra000283.1-P	Field mustard	nucleus	68.01	77.72
CDX83509	Canola	nucleus	68.01	77.72
CDX70453	Canola	nucleus	66.95	77.64
CDY29961	Canola	nucleus	66.95	77.64
CDY42809	Canola	nucleus	67.8	77.29
CDY14866	Canola	nucleus	64.83	75.93
AT3G59060.2	Thale cress	nucleus	55.72	59.23
KRH45975	Soybean	nucleus	38.98	35.05
TraesCS2B01G273500.1	Wheat	nucleus	25.64	33.8
TraesCS2A01G253900.2	Wheat	nucleus	25.64	33.8
HORVU2Hr1G060680.1	Barley	nucleus	25.64	33.43
Os03t0782500-01	Rice	nucleus	29.03	33.41
HORVU5Hr1G102240.3	Barley	nucleus	27.97	33.33
KRG99030	Soybean	nucleus	38.35	33.09
Solyc07g043580.2.1	Tomato	nucleus	34.53	32.93
VIT_12s0028g01110.t01	Wine grape	nucleus	38.77	32.8
TraesCS5B01G422000.1	Wheat	nucleus	27.97	32.2
KRH73584	Soybean	nucleus	37.92	31.85
KRH14535	Soybean	nucleus	37.71	31.67
TraesCS5D01G428400.2	Wheat	nucleus	27.97	31.58
PGSC0003DMT400041156	Potato	nucleus	34.32	31.33
Zm00001d034298_P001	Maize	nucleus	27.97	31.28
TraesCS5A01G420200.1	Wheat	nucleus	26.27	29.52
TraesCS2D01G254400.3	Wheat	nucleus	26.48	29.07
Zm00001d013130_P001	Maize	nucleus	23.52	28.68
OQU88421	Sorghum	nucleus	24.79	28.33
Os07t0143200-01	Rice	nucleus	24.79	28.26
AT5G67110.1	Thale cress	nucleus	11.65	26.19
AT2G20180.2	Thale cress	nucleus	24.58	24.27
AT4G28815.1	Thale cress	vacuole	15.25	23.45
AT4G28790.1	Thale cress	nucleus	19.07	21.79
AT4G36930.1	Thale cress	nucleus	15.68	19.84
AT4G00050.1	Thale cress	nucleus	16.74	19.8
AT4G28800.2	Thale cress	nucleus	19.07	19.69
AT2G46970.1	Thale cress	nucleus	16.53	18.75
AT4G28811.1	Thale cress	nucleus	21.19	18.38
KXG37432	Sorghum	plastid	18.64	18.26
AT3G62090.2	Thale cress	nucleus	13.98	18.18
AT1G09530.3	Thale cress	nucleus	20.13	18.13
AT2G24260.1	Thale cress	nucleus	13.14	17.71
AT5G58010.1	Thale cress	nucleus	10.81	17.17
AT4G02590.1	Thale cress	nucleus	11.02	16.77
AT4G30980.2	Thale cress	nucleus, plastid	12.29	16.2
AT1G03040.3	Thale cress	nucleus	10.38	14.71

Protein Annotations

MapMan:15.5.32	MapMan:26.1.1.4	Gene3D:4.10.280.10	EntrezGene:818903	UniProt:A0A1P8AX08	ProteinID:AAD22130.2
EMBL:AB493588	ProteinID:ABP96467.1	ProteinID:ABP96468.1	ProteinID:ABP96469.1	ProteinID:ABP96470.1	ProteinID:ABP96471.1
ProteinID:ABP96472.1	ProteinID:ABP96473.1	ProteinID:ABP96474.1	ProteinID:ABP96475.1	ProteinID:ABP96476.1	ProteinID:ABP96477.1
ProteinID:ABP96478.1	ProteinID:ABP96479.1	ProteinID:ABP96480.1	ProteinID:ADE08789.1	ProteinID:ADE08790.1	ProteinID:ADE08791.1
ProteinID:ADE08792.1	ProteinID:ADE08793.1	ProteinID:ADE08794.1	ProteinID:ADE08795.1	ProteinID:ADE08796.1	ProteinID:AEC10197.1
EMBL:AF251694	EMBL:AF360221	EMBL:AJ440755	EMBL:AK316898	ProteinID:ANM61196.1	ArrayExpress:AT2G43010
EnsemblPlantsGene:AT2G43010	RefSeq:AT2G43010	TAIR:AT2G43010	RefSeq:AT2G43010-TAIR-G	EnsemblPlants:AT2G43010.5	EMBL:AY142625
ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0007154	GO:GO:0007165	GO:GO:0007275	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009585	GO:GO:0009605	GO:GO:0009628	GO:GO:0009704
GO:GO:0009719	GO:GO:0009791	GO:GO:0009987	GO:GO:0010017	GO:GO:0010161	GO:GO:0010244
GO:GO:0010600	GO:GO:0010928	GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638
RefSeq:NP_001323426.1	RefSeq:NP_565991.2	PFAM:PF00010	Symbol:PIF4	PFscan:PS50888	PANTHER:PTHR12565
PANTHER:PTHR12565:SF194	SMART:SM00353	SUPFAM:SSF47459	UniParc:UPI0008484E45	InterPro:bHLH_dom	SEG:seg

Description

PIF4phytochrome interacting factor 4 [Source:TAIR;Acc:AT2G43010]

Coordinates

chr2:+:17886798..17889087

Molecular Weight (calculated)

53286.1 Da

IEP (calculated)

7.868

GRAVY (calculated)

-0.697

Length

472 amino acids

Sequence
(BLAST)

001: MLLLVSLNHK LSLALFTSAI KYILRLIKLF FLFILKCLQR SDMEHQGWSF EENYSLSTNR RSIRPQDELV ELLWRDGQVV LQSQTHREQT QTQKQDHHEE
101: ALRSSTFLED QETVSWIQYP PDEDPFEPDD FSSHFFSTMD PLQRPTSETV KPKSSPEPPQ VMVKPKACPD PPPQVMPPPK FRLTNSSSGI RETEMEQYSV
201: TTVGPSHCGS NPSQNDLDVS MSHDRSKNIE EKLNPNASSS SGGSSGCSFG KDIKEMASGR CITTDRKRKR INHTDESVSL SDAIGNKSNQ RSGSNRRSRA
301: AEVHNLSERR RRDRINERMK ALQELIPHCS KTDKASILDE AIDYLKSLQL QLQVMWMGSG MAAAAASAPM MFPGVQPQQF IRQIQSPVQL PRFPVMDQSA
401: IQNNPGLVCQ NPVQNQIISD RFARYIGGFP HMQAATQMQP MEMLRFSSPA GQQSQQPSSV PTKTTDGSRL DH

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.