Factsheet for Bra037742.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY30375	Canola	nucleus	100.0	100.0
CDX70453	Canola	nucleus	97.78	97.54
CDY29961	Canola	nucleus	97.78	97.54
CDY14866	Canola	nucleus	92.36	93.05
Bra000283.1-P	Field mustard	nucleus	76.6	75.3
AT2G43010.5	Thale cress	extracellular, vacuole	78.82	67.8
Bra007430.1-P	Field mustard	nucleus	59.36	56.57
TraesCS2A01G253900.2	Wheat	nucleus	29.56	33.52
TraesCS2B01G273500.1	Wheat	nucleus	29.31	33.24
HORVU2Hr1G060680.1	Barley	nucleus	29.31	32.87
Solyc07g043580.2.1	Tomato	nucleus	39.66	32.53
HORVU5Hr1G102240.3	Barley	nucleus	31.28	32.07
KRH45975	Soybean	nucleus	41.38	32.0
VIT_12s0028g01110.t01	Wine grape	nucleus	43.35	31.54
Os03t0782500-01	Rice	nucleus	31.77	31.46
PGSC0003DMT400041156	Potato	nucleus	39.9	31.33
TraesCS5B01G422000.1	Wheat	nucleus	31.03	30.73
TraesCS5D01G428400.2	Wheat	nucleus	31.03	30.14
KRG99030	Soybean	nucleus	40.39	29.98
Zm00001d034298_P001	Maize	nucleus	30.54	29.38
KRH73584	Soybean	nucleus	40.15	29.0
KRH14535	Soybean	nucleus	40.15	29.0
TraesCS5A01G420200.1	Wheat	nucleus	29.31	28.33
TraesCS2D01G254400.3	Wheat	nucleus	29.8	28.14
OQU88421	Sorghum	nucleus	28.57	28.09
Zm00001d013130_P001	Maize	nucleus	25.12	26.36
Os07t0143200-01	Rice	nucleus	26.6	26.09
Bra012133.1-P	Field mustard	nucleus, plastid	12.56	23.83
Bra037312.1-P	Field mustard	nucleus	11.33	22.01
Bra011237.1-P	Field mustard	plastid	11.58	21.76
Bra010591.1-P	Field mustard	nucleus, plastid	17.49	20.82
Bra003483.1-P	Field mustard	nucleus	15.27	20.2
Bra011740.1-P	Field mustard	nucleus, plastid	17.49	20.06
Bra000560.1-P	Field mustard	nucleus	18.47	19.33
Bra004489.1-P	Field mustard	nucleus	18.23	18.5
Bra036256.1-P	Field mustard	nucleus	10.34	18.42
Bra031668.1-P	Field mustard	nucleus	21.92	18.09
Bra020017.1-P	Field mustard	nucleus	21.92	18.02
Bra011061.1-P	Field mustard	nucleus	22.66	17.8
Bra000436.1-P	Field mustard	nucleus	17.24	17.33
KXG37432	Sorghum	plastid	20.2	17.01
Bra020398.1-P	Field mustard	nucleus	11.58	16.79
Bra002679.1-P	Field mustard	nucleus	11.82	16.61
Bra011062.1-P	Field mustard	cytosol	18.72	16.59
Bra018539.1-P	Field mustard	nucleus	10.34	16.54
Bra006788.1-P	Field mustard	nucleus	12.07	16.33
Bra000872.1-P	Field mustard	nucleus	12.07	15.86
Bra032111.1-P	Field mustard	nucleus	13.55	15.8
Bra007863.1-P	Field mustard	nucleus	12.81	15.38
Bra033368.1-P	Field mustard	nucleus	11.58	15.11
Bra007660.1-P	Field mustard	nucleus	13.55	13.03

Protein Annotations

MapMan:15.5.32	MapMan:26.1.1.4	Gene3D:4.10.280.10	EnsemblPlantsGene:Bra037742	EnsemblPlants:Bra037742.1	EnsemblPlants:Bra037742.1-P
ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0046983	InterPro:HLH_DNA-bd_sf
InterPro:IPR011598	InterPro:IPR036638	UniProt:M4F9H9	PFAM:PF00010	PFscan:PS50888	PANTHER:PTHR12565
PANTHER:PTHR12565:SF194	SMART:SM00353	SUPFAM:SSF47459	UniParc:UPI0002543ABE	InterPro:bHLH_dom	SEG:seg

Description

AT2G43010 (E=2e-140) PIF4, SRL2 | PIF4 (phytochrome interacting factor 4); DNA binding / protein binding / transcription factor

Coordinates

chrA04:+:17920596..17922563

Molecular Weight (calculated)

45753.6 Da

IEP (calculated)

8.340

GRAVY (calculated)

-0.858

Length

406 amino acids

Sequence
(BLAST)

001: MEHQGWNFEE NYNLSNNRRP LRPQDELVEL LWRDGQVVLQ SQTNREQTQA QTVKHDHHQE TLRSQTFLDD QETVSWLQYP PYEDQFITDG FSSHFFSTGN
101: PLERPAPETV KHEAGPDPPD QAMPPPKFRL TNSSSSVKEL GKEQYSVVTV GPSHCGSSQS HNNLDVSMRH DRSKTVNERL YHNAGSSSGG SSGCSFGKNI
201: KEMAGVQSIT TDRKRKHIID TDGYVSQSDV IGNKSNQPSG STRRSRAAEV HNLSERRRRD RINERMKALQ ELIPHCTKTD KASILDEAID YMKSLKLQLQ
301: VMWMGNGMAA AATAPMMLPD VQPQPFIRQM QSPVQLPRFP VMNNPGIVCQ NPVQNQVFSN RFDRYIGVFP QMQAASQPMA MLRFGSQAGQ QSQQPSAPTK
401: TTDGSR

Best Arabidopsis Sequence Match ( AT2G43010.2 )
(BLAST)

001: MEHQGWSFEE NYSLSTNRRS IRPQDELVEL LWRDGQVVLQ SQTHREQTQT QKQDHHEEAL RSSTFLEDQE TVSWIQYPPD EDPFEPDDFS SHFFSTMDPL
101: QRPTSETVKP KSSPEPPQVM VKPKACPDPP PQVMPPPKFR LTNSSSGIRE TEMEQYSVTT VGPSHCGSNP SQNDLDVSMS HDRSKNIEEK LNPNASSSSG
201: GSSGCSFGKD IKEMASGRCI TTDRKRKRIN HTDESVSLSD AIGNKSNQRS GSNRRSRAAE VHNLSERRRR DRINERMKAL QELIPHCSKT DKASILDEAI
301: DYLKSLQLQL QVMWMGSGMA AAAASAPMMF PGVQPQQFIR QIQSPVQLPR FPVMDQSAIQ NNPGLVCQNP VQNQIISDRF ARYIGGFPHM QAATQPMEML
401: RFSSPAGQQS QQPSSVPTKT TDGSRLDH

Arabidopsis Description

PIF4phytochrome interacting factor 4 [Source:TAIR;Acc:AT2G43010]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.