Factsheet for Bra031668.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY06358	Canola	nucleus	97.56	97.76
CDY22636	Canola	nucleus	95.73	95.93
Bra020017.1-P	Field mustard	nucleus	79.88	79.55
AT1G09530.3	Thale cress	nucleus	82.72	77.67
VIT_07s0005g02510.t01	Wine grape	nucleus	14.02	34.5
KRG96663	Soybean	nucleus	34.96	27.17
Bra012133.1-P	Field mustard	nucleus, plastid	11.79	27.1
KRH68390	Soybean	nucleus	34.15	26.92
PGSC0003DMT400047079	Potato	nucleus	36.18	25.14
Solyc01g102300.2.1	Tomato	nucleus	35.57	24.48
Zm00001d024783_P001	Maize	nucleus	25.0	24.36
Bra011237.1-P	Field mustard	plastid	10.37	23.61
Bra000283.1-P	Field mustard	nucleus	19.72	23.49
Bra037312.1-P	Field mustard	nucleus	9.96	23.45
GSMUA_Achr1P19000_001	Banana	mitochondrion, nucleus	28.05	23.27
Os05t0139100-01	Rice	nucleus	23.37	22.77
Bra007430.1-P	Field mustard	nucleus	19.72	22.77
HORVU1Hr1G017900.1	Barley	nucleus	22.56	22.52
Bra004489.1-P	Field mustard	nucleus	18.29	22.5
Zm00001d040536_P005	Maize	nucleus	25.81	22.4
KXG32305	Sorghum	nucleus	27.44	22.35
TraesCS1D01G084200.1	Wheat	nucleus	22.76	22.31
TraesCS1B01G100400.2	Wheat	nucleus	22.56	22.11
TraesCS1A01G083000.1	Wheat	nucleus	22.76	22.09
Bra037742.1-P	Field mustard	nucleus	18.09	21.92
Os01t0286100-01	Rice	nucleus	27.03	20.88
Bra003483.1-P	Field mustard	nucleus	13.01	20.85
Bra010591.1-P	Field mustard	nucleus, plastid	14.43	20.82
Zm00001d008205_P001	Maize	nucleus	26.83	20.69
Bra000560.1-P	Field mustard	nucleus	16.06	20.36
Bra011740.1-P	Field mustard	nucleus, plastid	14.43	20.06
Bra000436.1-P	Field mustard	nucleus	16.06	19.55
Bra020398.1-P	Field mustard	nucleus	10.57	18.57
KXG21255	Sorghum	nucleus	25.81	18.46
Bra036256.1-P	Field mustard	nucleus	8.33	17.98
Bra002679.1-P	Field mustard	nucleus	10.37	17.65
Bra032111.1-P	Field mustard	nucleus	11.99	16.95
Bra006788.1-P	Field mustard	nucleus	10.16	16.67
Bra011061.1-P	Field mustard	nucleus	17.07	16.25
Bra018539.1-P	Field mustard	nucleus	8.33	16.14
Bra007863.1-P	Field mustard	nucleus	10.98	15.98
Bra011062.1-P	Field mustard	cytosol	14.02	15.07
Bra000872.1-P	Field mustard	nucleus	9.15	14.56
Bra033368.1-P	Field mustard	nucleus	8.94	14.15
Bra007660.1-P	Field mustard	nucleus	11.38	13.27

Protein Annotations

EnsemblPlants:Bra031668.1	EnsemblPlants:Bra031668.1-P	EnsemblPlantsGene:Bra031668	Gene3D:4.10.280.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	InterPro:bHLH_dom
PANTHER:PTHR12565	PANTHER:PTHR12565:SF284	PFAM:PF00010	PFscan:PS50888	SEG:seg	SMART:SM00353
SUPFAM:SSF47459	UniParc:UPI000254328A	UniProt:M4ES90	MapMan:15.5.32	MapMan:26.1.1.4	:

Description

AT1G09530 (E=3e-124) PIF3, POC1, PAP3 | PIF3 (PHYTOCHROME INTERACTING FACTOR 3); DNA binding / protein binding / transcription factor/ transcription regulator

Coordinates

chrA09:-:35315845..35318054

Molecular Weight (calculated)

53437.6 Da

IEP (calculated)

6.842

GRAVY (calculated)

-0.743

Length

492 amino acids

Sequence
(BLAST)

001: MPLFELFRLS KAAQDNNTSP PVDEVVELVW ENGQVSTQSR SKNTPPPHQG ASSRPREVGN SSKTTIMDEI PMSVPSLMTG LSQDDDFVPW INHHHPHQSL
101: DGYCSEFLQE EEMALFQRRN NSNESAPPPP AAASSSQHNG FQSHSLYGTD RAREPLVTSN KPGLINFSHF LRPATLGKSP NNNADRSKEK SPQSPPKVFQ
201: TKVLGAKEVL NESVASAMPK DSQKACLVSE DSGRKEQESE KAVVCSSVGS GNSLDGASES PSLSVKRKHS DVQDIDCHSE DVEGESGDGR KEAAPSRTGT
301: GSKRSRSAEV HNLSERRRRD RINEKMRALQ ELIPNCNKVD KASMLDEAIE YLKSLQLQVQ IMSMASGYYM PPVMFPPGMG HYPAAAAAMA MGMGMPYAMG
401: LPYMSRAGPS VNHGPQFQVP GMQQPVGMAI PRVSGGGFFT GSSSTMEMNK SDNGSTRDLS GGTKDETMTE NNNGLRPIKR KQTSSDQFCG SS

Best Arabidopsis Sequence Match ( AT1G09530.3 )
(BLAST)

001: MPLFELFRLT KAKLESAQDR NPSPPVDEVV ELVWENGQIS TQSQSSRSRN IPPPQANSSR AREIGNGSKT TMVDEIPMSV PSLMTGLSQD DDFVPWLNHH
101: PSLDGYCSDF LRDVSSPVTV NEQESDMAVN QTAFPLFQRR KDGNESAPAA SSSQYNGFQS HSLYGSDRAR DLPSQQTNPD RFTQTQEPLI TSNKPSLVNF
201: SHFLRPATFA KTTNNNLHDT KEKSPQSPPN VFQTRVLGAK DSEDKVLNES VASATPKDNQ KACLISEDSC RKDQESEKAV VCSSVGSGNS LDGPSESPSL
301: SLKRKHSNIQ DIDCHSEDVE EESGDGRKEA GPSRTGLGSK RSRSAEVHNL SERRRRDRIN EKMRALQELI PNCNKVDKAS MLDEAIEYLK SLQLQVQIMS
401: MASGYYLPPA VMFPPGMGHY PAAAAAMAMG MGMPYAMGLP DLSRGGSSVN HGPQFQVSGM QQQPVAMGIP RVSGGGIFAG SSTIGNGSTR DLSGSKDQTT
501: TNNNSNLKPI KRKQGSSDQF CGSS

Arabidopsis Description

PIF3Transcription factor PIF3 [Source:UniProtKB/Swiss-Prot;Acc:O80536]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.