Factsheet for Bra007863.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY34780	Canola	nucleus	99.11	99.11
CDX76819	Canola	nucleus	94.97	94.41
AT2G24260.1	Thale cress	nucleus	81.07	78.29
Bra032111.1-P	Field mustard	nucleus	79.29	77.01
Bra011237.1-P	Field mustard	plastid	41.42	64.81
Bra020398.1-P	Field mustard	nucleus	37.28	45.0
Bra036256.1-P	Field mustard	nucleus	29.88	44.3
Bra002679.1-P	Field mustard	nucleus	37.57	43.94
Bra006788.1-P	Field mustard	nucleus	37.28	42.0
Bra018539.1-P	Field mustard	nucleus	28.4	37.8
Bra000872.1-P	Field mustard	nucleus	32.25	35.28
Bra033368.1-P	Field mustard	nucleus	30.77	33.44
Bra012133.1-P	Field mustard	nucleus, plastid	13.61	21.5
Bra037312.1-P	Field mustard	nucleus	11.83	19.14
Bra010591.1-P	Field mustard	nucleus, plastid	15.09	14.96
Bra011740.1-P	Field mustard	nucleus, plastid	15.09	14.41
Bra000283.1-P	Field mustard	nucleus	16.57	13.56
Bra000560.1-P	Field mustard	nucleus	15.38	13.4
Bra003483.1-P	Field mustard	nucleus	12.13	13.36
Bra000436.1-P	Field mustard	nucleus	15.38	12.87
Bra037742.1-P	Field mustard	nucleus	15.38	12.81
Bra004489.1-P	Field mustard	nucleus	15.09	12.75
Bra007430.1-P	Field mustard	nucleus	14.79	11.74
Bra031668.1-P	Field mustard	nucleus	15.98	10.98
Bra020017.1-P	Field mustard	nucleus	15.68	10.73
Bra011062.1-P	Field mustard	cytosol	13.91	10.26
Bra007660.1-P	Field mustard	nucleus	12.13	9.72
Bra011061.1-P	Field mustard	nucleus	13.31	8.7

Protein Annotations

MapMan:15.5.32	Gene3D:4.10.280.10	EnsemblPlantsGene:Bra007863	EnsemblPlants:Bra007863.1	EnsemblPlants:Bra007863.1-P	GO:GO:0000003
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0007275	GO:GO:0008150	GO:GO:0009653	GO:GO:0009987	GO:GO:0016049
GO:GO:0030154	GO:GO:0040007	GO:GO:0046983	GO:GO:0048235	GO:GO:0048765	GO:GO:0048767
GO:GO:0055046	GO:GO:0080147	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	UniProt:M4CUG8
PFAM:PF00010	PFscan:PS50888	PANTHER:PTHR16223	PANTHER:PTHR16223:SF28	SMART:SM00353	SUPFAM:SSF47459
UniParc:UPI0002542DE3	InterPro:bHLH_dom	SEG:seg	:	:	:

Description

AT2G24260 (E=2e-104) | basic helix-loop-helix (bHLH) family protein

Coordinates

chrA09:+:31299699..31302338

Molecular Weight (calculated)

35649.1 Da

IEP (calculated)

6.962

GRAVY (calculated)

-0.419

Length

338 amino acids

Sequence
(BLAST)

001: MMNSSLLTPS SSSHVQTPAT TFDHEDFLDQ IFASSPWPSD EAHPPPPPPP PSSDGFVDSR HQQIMMMPLP SHHRNEVVDG SSVHSLYNGF SACGSLPFHI
101: PQGSAGGMMN QQGQALTQTQ AQKQPQVSAS IATGGTAAAP PQSRTKVRAR RGQATDPHSI AERLRRERIA ERMKGLQELV PNGNKTDKAS MLDEIIDYVK
201: FLQLQVKVLS MSRLGGGASI PSQISEENAS SAVAGGNQAT GNSNDSLTMT EHQVAKLMEE DMGSAMQYLQ GKGLCLMPIS LATAISTATC HSRAAGSVGG
301: HPSSPNLSGM TVQSTNKVRL SGNGVTEGSS PLAVKEAV

Best Arabidopsis Sequence Match ( AT2G24260.1 )
(BLAST)

001: MMNSSLLTPS SSSSSHIQTP STTFDHEDFL DQIFSSAPWP SVVDDAHPLP SDGFHGHDVD SRNQPIMMMP LNDGSSVHAL YNGFSVAGSL PNFQIPQGSG
101: GGLMNQQGQT QTQTQPQASA STATGGTVAA PPQSRTKIRA RRGQATDPHS IAERLRRERI AERMKALQEL VPNGNKTDKA SMLDEIIDYV KFLQLQVKVL
201: SMSRLGGAAS VSSQISEAGG SHGNASSAMV GGSQTAGNSN DSVTMTEHQV AKLMEEDMGS AMQYLQGKGL CLMPISLATA ISTATCHSRN PLIPGAVADV
301: GGPSPPNLSG MTIQSTSTKM GSGNGKLNGN GVTERSSSIA VKEAVSVSKA

Arabidopsis Description

BHLH66Transcription factor bHLH66 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZUG9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.