Factsheet for Bra020017.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY64745	Canola	nucleus	97.77	96.22
CDX94963	Canola	nucleus	92.51	91.77
Bra031668.1-P	Field mustard	nucleus	79.55	79.88
AT1G09530.3	Thale cress	nucleus	81.98	77.29
VIT_07s0005g02510.t01	Wine grape	nucleus	13.97	34.5
KRG96663	Soybean	nucleus	37.04	28.91
Bra012133.1-P	Field mustard	nucleus, plastid	12.35	28.5
KRH68390	Soybean	nucleus	35.43	28.04
PGSC0003DMT400047079	Potato	nucleus	38.26	26.69
Solyc01g102300.2.1	Tomato	nucleus	37.25	25.73
Zm00001d024783_P001	Maize	nucleus	25.1	24.55
Bra037312.1-P	Field mustard	nucleus	10.12	23.92
HORVU1Hr1G017900.1	Barley	nucleus	23.48	23.53
Zm00001d040536_P005	Maize	nucleus	26.92	23.46
TraesCS1A01G083000.1	Wheat	nucleus	23.89	23.27
Os05t0139100-01	Rice	nucleus	23.68	23.17
Bra011237.1-P	Field mustard	plastid	10.12	23.15
TraesCS1B01G100400.2	Wheat	nucleus	23.48	23.11
TraesCS1D01G084200.1	Wheat	nucleus	23.48	23.11
KXG32305	Sorghum	nucleus	28.14	23.01
Bra004489.1-P	Field mustard	nucleus	18.42	22.75
GSMUA_Achr1P19000_001	Banana	mitochondrion, nucleus	27.13	22.6
Bra000283.1-P	Field mustard	nucleus	18.83	22.52
Bra037742.1-P	Field mustard	nucleus	18.02	21.92
Bra007430.1-P	Field mustard	nucleus	18.83	21.83
Bra003483.1-P	Field mustard	nucleus	13.56	21.82
Os01t0286100-01	Rice	nucleus	27.33	21.19
Bra000560.1-P	Field mustard	nucleus	16.6	21.13
Bra010591.1-P	Field mustard	nucleus, plastid	14.57	21.11
Zm00001d008205_P001	Maize	nucleus	27.13	21.0
Bra000436.1-P	Field mustard	nucleus	17.0	20.79
Bra011740.1-P	Field mustard	nucleus, plastid	14.57	20.34
KXG21255	Sorghum	nucleus	25.91	18.6
Bra020398.1-P	Field mustard	nucleus	10.53	18.57
Bra002679.1-P	Field mustard	nucleus	10.53	17.99
Bra036256.1-P	Field mustard	nucleus	8.3	17.98
Bra006788.1-P	Field mustard	nucleus	10.32	17.0
Bra032111.1-P	Field mustard	nucleus	11.74	16.67
Bra011061.1-P	Field mustard	nucleus	17.0	16.25
Bra018539.1-P	Field mustard	nucleus	8.3	16.14
Bra007863.1-P	Field mustard	nucleus	10.73	15.68
Bra011062.1-P	Field mustard	cytosol	14.37	15.5
Bra007660.1-P	Field mustard	nucleus	12.55	14.69
Bra000872.1-P	Field mustard	nucleus	9.11	14.56
Bra033368.1-P	Field mustard	nucleus	8.91	14.15

Protein Annotations

EnsemblPlants:Bra020017.1	EnsemblPlants:Bra020017.1-P	EnsemblPlantsGene:Bra020017	Gene3D:4.10.280.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	InterPro:bHLH_dom
PANTHER:PTHR12565	PANTHER:PTHR12565:SF284	PFAM:PF00010	PFscan:PS50888	SEG:seg	SMART:SM00353
SUPFAM:SSF47459	UniParc:UPI000253E8B7	UniProt:M4DU24	MapMan:15.5.32	MapMan:26.1.1.4	:

Description

AT1G09530 (E=1e-195) PIF3, POC1, PAP3 | PIF3 (PHYTOCHROME INTERACTING FACTOR 3); DNA binding / protein binding / transcription factor/ transcription regulator

Coordinates

chrA06:+:3256704..3258854

Molecular Weight (calculated)

53989.2 Da

IEP (calculated)

6.036

GRAVY (calculated)

-0.735

Length

494 amino acids

Sequence
(BLAST)

001: MPLFELFRLA NANVEYAQDE NTSPPVDEVV ELVWENGQIS TQSQSSRSRN IPPPQSIHQA RAREIGTGPK ATMVDEIPMS VPSLMTGLSQ DDDLVPWLNP
101: HHQSLDGYCS DLLHDVSPVT VNEQESDAFP RRNNGDESAP AASSSQFNGF DSHSLYGTGR AKDPVTQRQE PLVTSNKPGL LNFSHFLRTA ALAKTNNVSK
201: EKSPQSPPNV FQTRVLGAKD KVLNEPKDNN QKTCLVSEDS NRKEQESEKA VVCSSVGSGN SLDGPSESPL KRKRLDVQDI ECHSEDVEGE SGDGRKETAP
301: SRTGIGSKRS RSAEVHNLSE RRRRDRINEK MRALQELIPN CNKVDKASML DEAIEYLKSL QLQVQFMSMA SGYYMPPVMF PPGMGHHYQA AAMAMGMGMP
401: YAMGLPDMSR GGPSVNNGPQ FQVPGMQQPV AMAIPRVSAG GFFGSSTAEM NKSDDGSTRD LSGGTKDQTT TKDNNSLRPI KRKQASSDQF CGSL

Best Arabidopsis Sequence Match ( AT1G09530.3 )
(BLAST)

001: MPLFELFRLT KAKLESAQDR NPSPPVDEVV ELVWENGQIS TQSQSSRSRN IPPPQANSSR AREIGNGSKT TMVDEIPMSV PSLMTGLSQD DDFVPWLNHH
101: PSLDGYCSDF LRDVSSPVTV NEQESDMAVN QTAFPLFQRR KDGNESAPAA SSSQYNGFQS HSLYGSDRAR DLPSQQTNPD RFTQTQEPLI TSNKPSLVNF
201: SHFLRPATFA KTTNNNLHDT KEKSPQSPPN VFQTRVLGAK DSEDKVLNES VASATPKDNQ KACLISEDSC RKDQESEKAV VCSSVGSGNS LDGPSESPSL
301: SLKRKHSNIQ DIDCHSEDVE EESGDGRKEA GPSRTGLGSK RSRSAEVHNL SERRRRDRIN EKMRALQELI PNCNKVDKAS MLDEAIEYLK SLQLQVQIMS
401: MASGYYLPPA VMFPPGMGHY PAAAAAMAMG MGMPYAMGLP DLSRGGSSVN HGPQFQVSGM QQQPVAMGIP RVSGGGIFAG SSTIGNGSTR DLSGSKDQTT
501: TNNNSNLKPI KRKQGSSDQF CGSS

Arabidopsis Description

PIF3Transcription factor PIF3 [Source:UniProtKB/Swiss-Prot;Acc:O80536]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.