Factsheet for Os05t0139100-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Os02t0618200-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G46970.1	Os02t0618200-01	AT5G61380.1	11828029

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os01t0286100-01	Rice	nucleus	47.13	37.36
VIT_07s0005g02510.t01	Wine grape	nucleus	14.46	36.5
Os04t0618600-01	Rice	nucleus	11.49	32.04
KRH69138	Soybean	cytosol, nucleus, vacuole	11.09	31.11
Os06t0164400-01	Rice	cytosol, mitochondrion, nucleus	10.89	27.92
Os03t0782500-01	Rice	nucleus	20.59	25.37
GSMUA_Achr5P18390_001	Banana	nucleus	29.7	24.75
Os12t0610200-01	Rice	nucleus	21.19	24.04
CDY22636	Canola	nucleus	23.17	23.83
GSMUA_Achr1P19000_001	Banana	mitochondrion, nucleus	27.92	23.78
CDY64745	Canola	nucleus	23.56	23.71
CDX94963	Canola	nucleus	23.37	23.69
Bra020017.1-P	Field mustard	nucleus	23.17	23.68
Os02t0805250-00	Rice	nucleus	13.07	23.57
Bra031668.1-P	Field mustard	nucleus	22.77	23.37
CDY06358	Canola	nucleus	22.57	23.22
VIT_14s0060g00260.t01	Wine grape	nucleus	32.08	22.85
CDX67873	Canola	nucleus	13.86	22.8
Bra003483.1-P	Field mustard	nucleus	13.86	22.8
AT1G09530.3	Thale cress	nucleus	22.97	22.14
Os07t0182200-01	Rice	cytosol	5.94	22.06
KRH33663	Soybean	nucleus	19.6	22.05
AT3G62090.2	Thale cress	nucleus	15.64	21.76
CDX80064	Canola	nucleus	17.23	21.75
Bra004489.1-P	Field mustard	nucleus	17.23	21.75
CDY65446	Canola	nucleus	13.86	21.15
PGSC0003DMT400047079	Potato	nucleus	29.5	21.05
CDY66254	Canola	nucleus	16.63	21.0
AT2G46970.1	Thale cress	nucleus	17.23	20.91
KRH33733	Soybean	nucleus	28.51	20.84
Os07t0143200-01	Rice	nucleus	17.03	20.77
KRG96663	Soybean	nucleus	25.74	20.54
KRH68390	Soybean	nucleus	25.35	20.51
KRG90443	Soybean	nucleus	29.31	20.5
Solyc01g102300.2.1	Tomato	nucleus	28.51	20.14
KRH68348	Soybean	nucleus	20.59	20.12
CDY50911	Canola	nucleus	10.69	19.93
CDX83349	Canola	nucleus	15.45	19.31
Bra000436.1-P	Field mustard	nucleus	15.45	19.31
KRG96615	Soybean	nucleus	19.21	18.73
CDX76616	Canola	extracellular	12.67	17.88
CDY11401	Canola	extracellular	12.28	17.61
Os06t0184000-00	Rice	nucleus	13.66	17.34
Os10t0556200-01	Rice	nucleus	15.64	16.99
Os03t0797600-01	Rice	nucleus	9.11	15.65
Bra007660.1-P	Field mustard	nucleus	12.48	14.93
Os02t0795800-00	Rice	endoplasmic reticulum, mitochondrion, nucleus, plastid	7.92	14.29
Os03t0639300-01	Rice	nucleus	7.72	12.7
Os06t0193400-01	Rice	nucleus	11.49	12.13
Os02t0564700-01	Rice	nucleus	10.69	10.31

Protein Annotations

MapMan:15.5.32	MapMan:26.1.1.4	Gene3D:4.10.280.10	EntrezGene:4337752	ProteinID:AAT77368.1	ProteinID:AAU10768.1
EMBL:AB667900	EMBL:AK287958	ProteinID:BAF16507.1	ProteinID:BAS92179.1	GO:GO:0000003	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0007154	GO:GO:0007165	GO:GO:0007275
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009719	GO:GO:0009742	GO:GO:0009791
GO:GO:0009987	GO:GO:0040007	GO:GO:0040008	GO:GO:0046983	GO:GO:0080113	InterPro:HLH_DNA-bd_sf
InterPro:IPR011598	InterPro:IPR036638	EnsemblPlantsGene:Os05g0139100	EnsemblPlants:Os05t0139100-01	PFAM:PF00010	PFscan:PS50888
PANTHER:PTHR12565	PANTHER:PTHR12565:SF284	UniProt:Q6AT90	SMART:SM00353	SUPFAM:SSF47459	UniParc:UPI00003FE6E9
RefSeq:XP_015638282.1	InterPro:bHLH_dom	SEG:seg	:	:	:

Description

PIL16Helix-loop-helix DNA-binding domain containing protein. (Os05t0139100-01)

Coordinates

chr5:+:2246835..2248876

Molecular Weight (calculated)

53032.1 Da

IEP (calculated)

6.253

GRAVY (calculated)

-0.446

Length

505 amino acids

Sequence
(BLAST)

001: MLRGNDTGSD LAELLWDNGA PAPLRPPPPP PFQPFTCSAA ATTSPPAHDY LFIKNLMRGG GAANHHHHDD DDDDDDDVPW LHYHPVVDDD DDADADTAPL
101: PPDYCAALLS GLSDHLPPPA AAASRVDPDP CSSSHGAVVP STSAAAAKQA RTSGGGGGGV MNFTFFSRPL QQRPSGGETA SASASAAATS TVPVESTVVQ
201: AATNRLRSTP LFSDQRMAWL HPPKPSPRAA APPPPPPLAP TTRHRLDTAA ATATVAQRLP PSEARAPDAP PPAATATATT SSVCSGNGDR RQLNWRDSHN
301: NQSAEWSASQ DELDLDDELA GVHRRSAARS SKRSRTAEVH NLSERRRRDR INEKMRALQE LIPNCNKIDK ASMLEEAIEY LKTLQLQVQM MSMGTGMFVP
401: PMMLPAAAAA MQHHHMQMQQ MAGPMAAAAH FPHLGAAAAM GLAGFGMPAA AQFPCPMFPA APPMSMFAPP PPPPPFPHAA ATAVEQTPSP PGAADAGNAP
501: AVKQA

Best Arabidopsis Sequence Match ( AT1G09530.3 )
(BLAST)

001: MPLFELFRLT KAKLESAQDR NPSPPVDEVV ELVWENGQIS TQSQSSRSRN IPPPQANSSR AREIGNGSKT TMVDEIPMSV PSLMTGLSQD DDFVPWLNHH
101: PSLDGYCSDF LRDVSSPVTV NEQESDMAVN QTAFPLFQRR KDGNESAPAA SSSQYNGFQS HSLYGSDRAR DLPSQQTNPD RFTQTQEPLI TSNKPSLVNF
201: SHFLRPATFA KTTNNNLHDT KEKSPQSPPN VFQTRVLGAK DSEDKVLNES VASATPKDNQ KACLISEDSC RKDQESEKAV VCSSVGSGNS LDGPSESPSL
301: SLKRKHSNIQ DIDCHSEDVE EESGDGRKEA GPSRTGLGSK RSRSAEVHNL SERRRRDRIN EKMRALQELI PNCNKVDKAS MLDEAIEYLK SLQLQVQIMS
401: MASGYYLPPA VMFPPGMGHY PAAAAAMAMG MGMPYAMGLP DLSRGGSSVN HGPQFQVSGM QQQPVAMGIP RVSGGGIFAG SSTIGNGSTR DLSGSKDQTT
501: TNNNSNLKPI KRKQGSSDQF CGSS

Arabidopsis Description

PIF3Transcription factor PIF3 [Source:UniProtKB/Swiss-Prot;Acc:O80536]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.