Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- nucleus 2
- extracellular 3
- endoplasmic reticulum 2
- vacuole 2
- plasma membrane 2
- golgi 2
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY11401 | Canola | extracellular | 94.41 | 96.02 |
| CDY65446 | Canola | nucleus | 69.27 | 74.92 |
| CDX67873 | Canola | nucleus | 62.29 | 72.64 |
| AT3G62090.2 | Thale cress | nucleus | 67.32 | 66.39 |
| CDX80064 | Canola | nucleus | 42.74 | 38.25 |
| CDY66254 | Canola | nucleus | 42.18 | 37.75 |
| CDY50911 | Canola | nucleus | 28.21 | 37.27 |
| CDX83349 | Canola | nucleus | 41.34 | 36.63 |
| CDY37185 | Canola | mitochondrion | 7.82 | 28.57 |
| KRH69138 | Soybean | cytosol, nucleus, vacuole | 12.01 | 23.89 |
| VIT_07s0005g02510.t01 | Wine grape | nucleus | 12.85 | 23.0 |
| CDY65390 | Canola | nucleus | 12.29 | 21.05 |
| CDX91917 | Canola | nucleus | 17.6 | 18.16 |
| CDX83214 | Canola | nucleus | 17.04 | 17.53 |
| CDY67566 | Canola | nucleus, plastid | 13.13 | 17.15 |
| CDY00603 | Canola | nucleus, plastid | 13.13 | 17.15 |
| KRH33663 | Soybean | nucleus | 21.23 | 16.93 |
| CDX74328 | Canola | nucleus | 18.16 | 16.8 |
| CDY35224 | Canola | nucleus | 11.73 | 16.22 |
| CDY24734 | Canola | plastid | 6.42 | 16.2 |
| CDY21498 | Canola | nucleus | 17.32 | 16.02 |
| CDY12804 | Canola | nucleus, plastid | 9.5 | 15.74 |
| CDY01438 | Canola | nucleus, plastid | 9.5 | 15.6 |
| CDX83509 | Canola | nucleus | 17.04 | 14.77 |
| CDY14866 | Canola | nucleus | 15.92 | 14.14 |
| CDY42809 | Canola | nucleus | 16.2 | 14.01 |
| CDX70453 | Canola | nucleus | 15.92 | 14.0 |
| CDY29961 | Canola | nucleus | 15.92 | 14.0 |
| CDY31989 | Canola | nucleus | 18.44 | 13.87 |
| CDY06026 | Canola | nucleus | 17.04 | 13.8 |
| CDY30375 | Canola | nucleus | 15.64 | 13.79 |
| CDY44048 | Canola | nucleus, plastid | 13.13 | 13.78 |
| CDX71916 | Canola | nucleus | 17.04 | 13.77 |
| KRH68348 | Soybean | nucleus | 19.83 | 13.73 |
| CDY05725 | Canola | nucleus | 19.27 | 13.61 |
| KRG96615 | Soybean | nucleus | 19.55 | 13.51 |
| Zm00001d024783_P001 | Maize | nucleus | 18.44 | 13.07 |
| CDY22448 | Canola | nucleus, plastid | 12.85 | 13.07 |
| CDX75629 | Canola | nucleus | 12.57 | 13.01 |
| CDY06870 | Canola | nucleus | 16.2 | 12.75 |
| Os05t0139100-01 | Rice | nucleus | 17.88 | 12.67 |
| CDY11836 | Canola | nucleus | 10.06 | 12.59 |
| CDY02785 | Canola | nucleus | 10.34 | 12.5 |
| CDY46132 | Canola | endoplasmic reticulum | 6.15 | 12.5 |
| CDY55014 | Canola | nucleus | 10.06 | 12.46 |
| TraesCS1B01G100400.2 | Wheat | nucleus | 17.32 | 12.35 |
| TraesCS1D01G084200.1 | Wheat | nucleus | 17.32 | 12.35 |
| CDY64745 | Canola | nucleus | 17.32 | 12.35 |
| CDX69281 | Canola | nucleus, plastid | 12.01 | 12.32 |
| CDY20290 | Canola | endoplasmic reticulum, extracellular | 6.98 | 12.32 |
| CDY06865 | Canola | nucleus | 12.29 | 12.26 |
| CDY32733 | Canola | nucleus | 10.34 | 12.25 |
| CDY28232 | Canola | nucleus | 11.17 | 12.23 |
| CDX94963 | Canola | nucleus | 16.76 | 12.05 |
| TraesCS1A01G083000.1 | Wheat | nucleus | 17.04 | 12.03 |
| CDX88653 | Canola | nucleus | 10.06 | 12.0 |
| CDY21898 | Canola | nucleus | 10.06 | 11.96 |
| CDX68710 | Canola | nucleus | 10.89 | 11.93 |
| CDY62262 | Canola | nucleus | 10.06 | 11.92 |
| CDY20289 | Canola | nucleus | 6.98 | 11.85 |
| CDY22062 | Canola | nucleus | 10.06 | 11.84 |
| CDY34780 | Canola | nucleus | 11.17 | 11.83 |
| CDX76819 | Canola | nucleus | 11.17 | 11.76 |
| CDY18143 | Canola | nucleus | 10.06 | 11.76 |
| CDX91293 | Canola | nucleus | 9.78 | 11.74 |
| CDX97278 | Canola | nucleus | 9.78 | 11.71 |
| CDX89919 | Canola | nucleus | 10.06 | 11.58 |
| HORVU1Hr1G017900.1 | Barley | nucleus | 15.92 | 11.56 |
| CDY22636 | Canola | nucleus | 15.64 | 11.41 |
| Zm00001d040536_P005 | Maize | nucleus | 17.88 | 11.29 |
| KXG32305 | Sorghum | nucleus | 18.99 | 11.26 |
| CDY18011 | Canola | nucleus | 9.5 | 11.18 |
| GSMUA_Achr1P19000_001 | Banana | mitochondrion, nucleus | 18.44 | 11.13 |
| CDY06358 | Canola | nucleus | 15.08 | 11.0 |
| PGSC0003DMT400047079 | Potato | nucleus | 21.23 | 10.73 |
| CDX90930 | Canola | nucleus | 9.22 | 10.65 |
| CDY35220 | Canola | nucleus | 10.89 | 10.51 |
| Zm00001d008205_P001 | Maize | nucleus | 18.72 | 10.5 |
| Os01t0286100-01 | Rice | nucleus | 18.44 | 10.36 |
| Solyc01g102300.2.1 | Tomato | nucleus | 20.11 | 10.07 |
| KXG21255 | Sorghum | nucleus | 19.27 | 10.03 |
| CDY06867 | Canola | nucleus | 13.13 | 9.75 |
| CDY46133 | Canola | nucleus | 4.75 | 8.9 |
| CDY35222 | Canola | nucleus | 13.69 | 8.49 |
Protein Annotations
| EnsemblPlants:CDX76616 | EnsemblPlantsGene:GSBRNA2T00127074001 | Gene3D:4.10.280.10 | GO:A0A078CHC3 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | InterPro:bHLH_dom |
| ncoils:Coil | PANTHER:PTHR12565 | PANTHER:PTHR12565:SF194 | PFscan:PS50888 | ProteinID:CDX76616 | ProteinID:CDX76616.1 |
| SEG:seg | SMART:SM00353 | SUPFAM:SSF47459 | UniParc:UPI0004EDF9E5 | MapMan:15.5.32 | : |
Description
BnaC08g32020D
Coordinates
chrLK031808:-:202816..204850
Molecular Weight (calculated)
39834.5 Da
IEP (calculated)
4.707
GRAVY (calculated)
-0.459
Length
358 amino acids
Sequence
(BLAST)
(BLAST)
001: MQMMFVLTKL IYCCCRLTDQ EYMELVFENG QILAKSQRSN GFSMHNQRTK SIVDLYEAEY NEDFKKTIHG ADTSDKNLVD TQVVPEPLVV AAYETNMLMN
101: QLNLIQSLKA SSSKRMVVDN ENRKDIVPPD EQSVVAERSV ELGYDSTDFT EDSEESTYQS SSLDDVRPQV PARTSNVLVK RRRKQKQTND INKKMRNLQD
201: LLPNSQKDDN EALLDEAINY MTTLQHQVQD LQMMTMGNRF VTPATMLPLG PQYSQMGLAT GMQMGVPQLL PAPVLGAGLP LVNTSADVLS VLNHPVGPVL
301: MPIQNSALFT PTENYLPQSV PPACAAFPNQ IPNSTISSNL DDARTHGGNL SGKESDKP
101: QLNLIQSLKA SSSKRMVVDN ENRKDIVPPD EQSVVAERSV ELGYDSTDFT EDSEESTYQS SSLDDVRPQV PARTSNVLVK RRRKQKQTND INKKMRNLQD
201: LLPNSQKDDN EALLDEAINY MTTLQHQVQD LQMMTMGNRF VTPATMLPLG PQYSQMGLAT GMQMGVPQLL PAPVLGAGLP LVNTSADVLS VLNHPVGPVL
301: MPIQNSALFT PTENYLPQSV PPACAAFPNQ IPNSTISSNL DDARTHGGNL SGKESDKP
001: MMFLPTDYCC RLSDQEYMEL VFENGQILAK GQRSNVSLHN QRTKSIMDLY EAEYNEDFMK SIIHGGGGAI TNLGDTQVVP QSHVAAAHET NMLESNKHVD
101: DSETLKASSS KRMMVDYHNR KKIKFIPPDE QSVVADRSFK LGFDTSSVGF TEDSEGSMYL SSSLDDESDD ARPQVPARTR KALVKRKRNA EAYNSPERNQ
201: RNDINKKMRT LQNLLPNSHK DDNESMLDEA INYMTNLQLQ VQMMTMGNRF VTPSMMMPLG PNYSQMGLAM GVGMQMGEQQ FLPAHVLGAG LPGINDSADM
301: LRFLNHPGLM PMQNSAPFIP TENCSPQSVP PSCAAFPNQI PNPNSLSNLD GATLHKKSRK TNR
101: DSETLKASSS KRMMVDYHNR KKIKFIPPDE QSVVADRSFK LGFDTSSVGF TEDSEGSMYL SSSLDDESDD ARPQVPARTR KALVKRKRNA EAYNSPERNQ
201: RNDINKKMRT LQNLLPNSHK DDNESMLDEA INYMTNLQLQ VQMMTMGNRF VTPSMMMPLG PNYSQMGLAM GVGMQMGEQQ FLPAHVLGAG LPGINDSADM
301: LRFLNHPGLM PMQNSAPFIP TENCSPQSVP PSCAAFPNQI PNPNSLSNLD GATLHKKSRK TNR
Arabidopsis Description
PIF6PIL2 [Source:UniProtKB/TrEMBL;Acc:A0A178VFI3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.