Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY37185 | Canola | mitochondrion | 16.99 | 44.9 |
| CDY06865 | Canola | nucleus | 59.85 | 43.18 |
| CDY06870 | Canola | nucleus | 65.25 | 37.14 |
| AT4G28815.1 | Thale cress | vacuole | 42.47 | 35.83 |
| CDY06867 | Canola | nucleus | 58.69 | 31.54 |
| TraesCS2D01G461900.1 | Wheat | nucleus | 18.92 | 31.21 |
| Os04t0618600-01 | Rice | nucleus | 21.24 | 30.39 |
| AT4G28800.2 | Thale cress | nucleus | 50.19 | 28.45 |
| HORVU2Hr1G104040.6 | Barley | nucleus | 20.46 | 28.19 |
| EES11436 | Sorghum | nucleus | 20.46 | 28.19 |
| TraesCS2B01G483300.1 | Wheat | nucleus | 20.08 | 27.66 |
| TraesCS2A01G461700.2 | Wheat | nucleus | 20.08 | 27.66 |
| TraesCS2D01G461700.3 | Wheat | nucleus | 20.08 | 27.66 |
| Zm00001d002288_P002 | Maize | nucleus | 21.62 | 26.17 |
| CDY35222 | Canola | nucleus | 54.83 | 24.61 |
| Solyc04g007430.1.1 | Tomato | nucleus | 17.37 | 24.46 |
| AT4G28811.1 | Thale cress | nucleus | 51.35 | 24.45 |
| CDY24734 | Canola | plastid | 12.36 | 22.54 |
| CDY65390 | Canola | nucleus | 18.15 | 22.49 |
| Zm00001d026317_P003 | Maize | nucleus, plastid | 20.46 | 22.36 |
| CDY01438 | Canola | nucleus, plastid | 18.53 | 22.02 |
| CDY67566 | Canola | nucleus, plastid | 23.17 | 21.9 |
| CDY00603 | Canola | nucleus, plastid | 23.17 | 21.9 |
| CDY35220 | Canola | nucleus | 31.27 | 21.83 |
| CDY12804 | Canola | nucleus, plastid | 18.15 | 21.76 |
| PGSC0003DMT400015377 | Potato | nucleus | 16.6 | 21.18 |
| CDY31989 | Canola | nucleus | 37.45 | 20.38 |
| CDY05725 | Canola | nucleus | 37.07 | 18.93 |
| CDX91917 | Canola | nucleus | 23.94 | 17.87 |
| CDX83214 | Canola | nucleus | 23.94 | 17.82 |
| AT4G28790.1 | Thale cress | nucleus | 28.19 | 17.68 |
| CDY20289 | Canola | nucleus | 13.9 | 17.06 |
| CDY11836 | Canola | nucleus | 17.76 | 16.08 |
| CDX74328 | Canola | nucleus | 23.94 | 16.02 |
| CDY22448 | Canola | nucleus, plastid | 21.62 | 15.91 |
| CDX75629 | Canola | nucleus | 21.24 | 15.9 |
| CDY44048 | Canola | nucleus, plastid | 20.85 | 15.84 |
| CDX69281 | Canola | nucleus, plastid | 21.24 | 15.76 |
| CDY55014 | Canola | nucleus | 17.37 | 15.57 |
| CDY02785 | Canola | nucleus | 17.76 | 15.54 |
| CDY21498 | Canola | nucleus | 23.17 | 15.5 |
| CDY50911 | Canola | nucleus | 16.22 | 15.5 |
| CDX83509 | Canola | nucleus | 24.71 | 15.5 |
| CDX67873 | Canola | nucleus | 18.15 | 15.31 |
| CDY32733 | Canola | nucleus | 17.76 | 15.23 |
| CDY14866 | Canola | nucleus | 23.55 | 15.14 |
| CDY30375 | Canola | nucleus | 23.55 | 15.02 |
| CDX88653 | Canola | nucleus | 17.37 | 15.0 |
| CDY42809 | Canola | nucleus | 23.94 | 14.98 |
| CDY62262 | Canola | nucleus | 17.37 | 14.9 |
| CDY29961 | Canola | nucleus | 23.17 | 14.74 |
| CDX70453 | Canola | nucleus | 23.17 | 14.74 |
| CDY65446 | Canola | nucleus | 18.53 | 14.5 |
| CDX80064 | Canola | nucleus | 22.39 | 14.5 |
| CDY28232 | Canola | nucleus | 18.15 | 14.37 |
| CDY66254 | Canola | nucleus | 22.01 | 14.25 |
| CDX68710 | Canola | nucleus | 17.76 | 14.07 |
| CDY06026 | Canola | nucleus | 23.94 | 14.03 |
| CDX71916 | Canola | nucleus | 23.94 | 14.0 |
| CDY20290 | Canola | endoplasmic reticulum, extracellular | 10.81 | 13.79 |
| CDX83349 | Canola | nucleus | 21.24 | 13.61 |
| CDY34780 | Canola | nucleus | 17.76 | 13.61 |
| CDX76819 | Canola | nucleus | 17.76 | 13.53 |
| CDX91293 | Canola | nucleus | 15.44 | 13.42 |
| CDY21898 | Canola | nucleus | 15.44 | 13.29 |
| CDY18011 | Canola | nucleus | 15.44 | 13.16 |
| CDY22062 | Canola | nucleus | 15.44 | 13.16 |
| CDY18143 | Canola | nucleus | 15.44 | 13.07 |
| CDX97278 | Canola | nucleus | 15.06 | 13.04 |
| CDY22636 | Canola | nucleus | 24.71 | 13.03 |
| CDY64745 | Canola | nucleus | 25.1 | 12.95 |
| CDX89919 | Canola | nucleus | 15.44 | 12.86 |
| CDX94963 | Canola | nucleus | 24.71 | 12.85 |
| CDY06358 | Canola | nucleus | 24.32 | 12.83 |
| CDX90930 | Canola | nucleus | 15.06 | 12.58 |
| CDX76616 | Canola | extracellular | 16.22 | 11.73 |
| CDY46133 | Canola | nucleus | 8.49 | 11.52 |
| CDY46132 | Canola | endoplasmic reticulum | 7.72 | 11.36 |
| CDY11401 | Canola | extracellular | 15.44 | 11.36 |
Protein Annotations
| MapMan:15.5.32 | MapMan:26.1.1.4 | Gene3D:4.10.280.10 | GO:A0A078HCM2 | UniProt:A0A078HCM2 | EnsemblPlants:CDY35224 |
| ProteinID:CDY35224 | ProteinID:CDY35224.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0046983 | EnsemblPlantsGene:GSBRNA2T00058135001 | InterPro:HLH_DNA-bd_sf |
| InterPro:IPR011598 | InterPro:IPR036638 | PFAM:PF00010 | PFscan:PS50888 | PANTHER:PTHR12565 | PANTHER:PTHR12565:SF145 |
| SMART:SM00353 | SUPFAM:SSF47459 | TMHMM:TMhelix | UniParc:UPI0004EDE52E | InterPro:bHLH_dom | SEG:seg |
Description
BnaA01g08070DBnaA01g08070D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HCM2]
Coordinates
chrLK032348:+:223987..226488
Molecular Weight (calculated)
29816.5 Da
IEP (calculated)
9.988
GRAVY (calculated)
-0.598
Length
259 amino acids
Sequence
(BLAST)
(BLAST)
001: MSPCGPIKRE TKNPTWKVMR SCKYRKLCSM HRDTRFLGAE KIGSLLFETG EEEARGSTSR KRSRAAEMHN ISERRRREKI NEKLKALQEL IPRCNKTDKA
101: SMLEDAIEYV KSLQLQIQMM SMGGGGMMPM MYNPNMQCFM APSAMGMNRP PFIPFPGTAF PRPPAHMAGL GPPYPAPPRY PFPNVHQPDP NQPQFPSYLN
201: PYSQFVGLQQ MQQPPPPLQV YFFFFYIIHC ALYSYVPYNG RCSQDGVLKC FNRIKQHHI
101: SMLEDAIEYV KSLQLQIQMM SMGGGGMMPM MYNPNMQCFM APSAMGMNRP PFIPFPGTAF PRPPAHMAGL GPPYPAPPRY PFPNVHQPDP NQPQFPSYLN
201: PYSQFVGLQQ MQQPPPPLQV YFFFFYIIHC ALYSYVPYNG RCSQDGVLKC FNRIKQHHI
001: MSSWPHHPLR QDYLCSELYA STPAPHPQSS VSLAPPPPKP PSSAPYGQII APRSAPRIQG TEEARGSTSR KRSRAAEMHN LAERRRREKI NERMKTLQQL
101: IPRCNKSTKV SMLEDVIEYV KSLEMQINQF MPHMAMGMNQ PPAYIPFPSQ AHMAGVGPSY PPPRYPFPNI QTFDPSRVWL QSPQPNPVSN QPQMNPYGQF
201: VGHHQMQQSL PPPLQVILSQ YPLCLFLCSN K
101: IPRCNKSTKV SMLEDVIEYV KSLEMQINQF MPHMAMGMNQ PPAYIPFPSQ AHMAGVGPSY PPPRYPFPNI QTFDPSRVWL QSPQPNPVSN QPQMNPYGQF
201: VGHHQMQQSL PPPLQVILSQ YPLCLFLCSN K
Arabidopsis Description
BHLH127Transcription factor bHLH127 [Source:UniProtKB/Swiss-Prot;Acc:Q7XHI7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.