Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY06026 | Canola | nucleus | 96.39 | 96.61 |
| Bra007430.1-P | Field mustard | nucleus | 92.55 | 96.24 |
| CDY00603 | Canola | nucleus, plastid | 52.6 | 85.04 |
| CDY67566 | Canola | nucleus, plastid | 52.6 | 85.04 |
| AT3G59060.2 | Thale cress | nucleus | 80.36 | 80.18 |
| CDY30375 | Canola | nucleus | 56.43 | 61.58 |
| CDX70453 | Canola | nucleus | 56.21 | 61.18 |
| CDY29961 | Canola | nucleus | 56.21 | 61.18 |
| CDX83509 | Canola | nucleus | 56.43 | 60.53 |
| CDY42809 | Canola | nucleus | 56.21 | 60.14 |
| CDY14866 | Canola | nucleus | 54.63 | 60.05 |
| CDY37185 | Canola | mitochondrion | 9.48 | 42.86 |
| TraesCS2B01G273500.1 | Wheat | nucleus | 26.86 | 33.24 |
| Os03t0782500-01 | Rice | nucleus | 30.7 | 33.17 |
| KRH45975 | Soybean | nucleus | 39.28 | 33.14 |
| TraesCS2A01G253900.2 | Wheat | nucleus | 26.64 | 32.96 |
| HORVU2Hr1G060680.1 | Barley | nucleus | 26.64 | 32.6 |
| HORVU5Hr1G102240.3 | Barley | nucleus | 29.12 | 32.58 |
| Solyc07g043580.2.1 | Tomato | nucleus | 35.67 | 31.92 |
| Zm00001d034298_P001 | Maize | nucleus | 30.25 | 31.75 |
| VIT_12s0028g01110.t01 | Wine grape | nucleus | 39.5 | 31.36 |
| TraesCS5B01G422000.1 | Wheat | nucleus | 28.89 | 31.22 |
| KRG99030 | Soybean | nucleus | 38.37 | 31.08 |
| PGSC0003DMT400041156 | Potato | nucleus | 36.12 | 30.95 |
| TraesCS5D01G428400.2 | Wheat | nucleus | 28.89 | 30.62 |
| KRH73584 | Soybean | nucleus | 37.25 | 29.36 |
| KRH14535 | Soybean | nucleus | 36.79 | 29.0 |
| Zm00001d013130_P001 | Maize | nucleus | 25.28 | 28.94 |
| OQU88421 | Sorghum | nucleus | 26.64 | 28.57 |
| TraesCS5A01G420200.1 | Wheat | nucleus | 27.09 | 28.57 |
| Os07t0143200-01 | Rice | nucleus | 26.19 | 28.02 |
| TraesCS2D01G254400.3 | Wheat | nucleus | 27.09 | 27.91 |
| CDY24734 | Canola | plastid | 7.67 | 23.94 |
| CDY35224 | Canola | nucleus | 14.0 | 23.94 |
| CDY01438 | Canola | nucleus, plastid | 11.29 | 22.94 |
| CDY12804 | Canola | nucleus, plastid | 11.06 | 22.69 |
| CDY65390 | Canola | nucleus | 10.61 | 22.49 |
| CDY31989 | Canola | nucleus | 24.15 | 22.48 |
| CDX67873 | Canola | nucleus | 15.58 | 22.48 |
| CDY06870 | Canola | nucleus | 22.57 | 21.98 |
| CDY20289 | Canola | nucleus | 10.38 | 21.8 |
| CDX91917 | Canola | nucleus | 16.93 | 21.61 |
| CDY35220 | Canola | nucleus | 18.06 | 21.56 |
| CDY05725 | Canola | nucleus | 24.61 | 21.5 |
| CDX83214 | Canola | nucleus | 16.7 | 21.26 |
| CDY65446 | Canola | nucleus | 15.8 | 21.15 |
| CDY06865 | Canola | nucleus | 16.7 | 20.61 |
| CDX69281 | Canola | nucleus, plastid | 15.8 | 20.06 |
| CDX80064 | Canola | nucleus | 18.06 | 20.0 |
| CDY44048 | Canola | nucleus, plastid | 15.35 | 19.94 |
| CDX74328 | Canola | nucleus | 17.38 | 19.9 |
| CDY22448 | Canola | nucleus, plastid | 15.58 | 19.6 |
| CDY22636 | Canola | nucleus | 21.67 | 19.55 |
| CDX75629 | Canola | nucleus | 15.12 | 19.36 |
| CDY06358 | Canola | nucleus | 21.44 | 19.35 |
| CDY06867 | Canola | nucleus | 20.99 | 19.29 |
| CDY66254 | Canola | nucleus | 17.38 | 19.25 |
| CDY21498 | Canola | nucleus | 16.48 | 18.86 |
| CDX94963 | Canola | nucleus | 20.99 | 18.67 |
| CDY64745 | Canola | nucleus | 20.77 | 18.33 |
| CDX83349 | Canola | nucleus | 16.48 | 18.07 |
| KXG37432 | Sorghum | plastid | 19.64 | 18.05 |
| CDY11836 | Canola | nucleus | 11.29 | 17.48 |
| CDY50911 | Canola | nucleus | 10.61 | 17.34 |
| CDY55014 | Canola | nucleus | 11.29 | 17.3 |
| CDX76616 | Canola | extracellular | 13.77 | 17.04 |
| CDY62262 | Canola | nucleus | 11.51 | 16.89 |
| CDY46133 | Canola | nucleus | 7.22 | 16.75 |
| CDX88653 | Canola | nucleus | 11.29 | 16.67 |
| CDY02785 | Canola | nucleus | 11.06 | 16.55 |
| CDY11401 | Canola | extracellular | 13.09 | 16.48 |
| CDX91293 | Canola | nucleus | 11.06 | 16.44 |
| CDY32733 | Canola | nucleus | 11.06 | 16.23 |
| CDX97278 | Canola | nucleus | 10.61 | 15.72 |
| CDY21898 | Canola | nucleus | 10.61 | 15.61 |
| CDY35222 | Canola | nucleus | 20.32 | 15.6 |
| CDY22062 | Canola | nucleus | 10.61 | 15.46 |
| CDY18011 | Canola | nucleus | 10.61 | 15.46 |
| CDX76819 | Canola | nucleus | 11.74 | 15.29 |
| CDY28232 | Canola | nucleus | 11.29 | 15.29 |
| CDX68710 | Canola | nucleus | 11.29 | 15.29 |
| CDY34780 | Canola | nucleus | 11.51 | 15.09 |
| CDX90930 | Canola | nucleus | 10.38 | 14.84 |
| CDX89919 | Canola | nucleus | 10.38 | 14.79 |
| CDY18143 | Canola | nucleus | 10.16 | 14.71 |
| CDY20290 | Canola | endoplasmic reticulum, extracellular | 5.64 | 12.32 |
| CDY46132 | Canola | endoplasmic reticulum | 4.29 | 10.8 |
Protein Annotations
| MapMan:15.5.32 | MapMan:26.1.1.4 | Gene3D:4.10.280.10 | GO:A0A078C4I2 | EnsemblPlants:CDX71916 | ProteinID:CDX71916 |
| ProteinID:CDX71916.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0046983 |
| EnsemblPlantsGene:GSBRNA2T00155661001 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | PFAM:PF00010 | PFscan:PS50888 |
| PANTHER:PTHR12565 | PANTHER:PTHR12565:SF194 | SMART:SM00353 | SUPFAM:SSF47459 | UniParc:UPI0004EF3874 | InterPro:bHLH_dom |
| SEG:seg | : | : | : | : | : |
Description
BnaC08g29580D
Coordinates
chrLK031795:+:1237593..1240308
Molecular Weight (calculated)
49782.8 Da
IEP (calculated)
7.454
GRAVY (calculated)
-0.812
Length
443 amino acids
Sequence
(BLAST)
(BLAST)
001: MEQLFSDWNF EDNFHMSSNK RSVRPEDELV ELLWRDGQVV LQSQVRREPS VQVQTHKHNQ ALRKPNNTYL ENQETIRKLN ENVQGDQETV SWIQYPPEDV
101: VDHPFESEFS SHFFSSIDHL EGPNHPKKPL PIKEAAKPEA KAMAPPKFRP PVVSVGPSHC GSNQSLNDNQ VTHPPVSVSD RSKNVEERLD TSSGGSSGCS
201: KETESGRSVT ISRKRKHVMD TDQESMSQSD ARLMSTDDQA MGNKSSQRSG STRRSRAAEV HNLSERRRRD RINERMKALQ ELIPHCSKTD KASILDEAID
301: YLKTLQMQLQ VMWMGSGMAA AAAAAATPMM FPGVQSSQYI NQMAMQSQMQ MPQFPVMNRP AAHNHPGLVC QNPAVQFQMQ AQNQMLSEQL ARYMGGFPPM
401: PATTQTQTVQ QPMDMMRFGS QVGQQSQLST PVTTDSLRMG KTG
101: VDHPFESEFS SHFFSSIDHL EGPNHPKKPL PIKEAAKPEA KAMAPPKFRP PVVSVGPSHC GSNQSLNDNQ VTHPPVSVSD RSKNVEERLD TSSGGSSGCS
201: KETESGRSVT ISRKRKHVMD TDQESMSQSD ARLMSTDDQA MGNKSSQRSG STRRSRAAEV HNLSERRRRD RINERMKALQ ELIPHCSKTD KASILDEAID
301: YLKTLQMQLQ VMWMGSGMAA AAAAAATPMM FPGVQSSQYI NQMAMQSQMQ MPQFPVMNRP AAHNHPGLVC QNPAVQFQMQ AQNQMLSEQL ARYMGGFPPM
401: PATTQTQTVQ QPMDMMRFGS QVGQQSQLST PVTTDSLRMG KTG
001: MEQVFADWNF EDNFHMSTNK RSIRPEDELV ELLWRDGQVV LQSQARREPS VQVQTHKQET LRKPNNIFLD NQETVQKPNY AALDDQETVS WIQYPPDDVI
101: DPFESEFSSH FFSSIDHLGG PEKPRTIEET VKHEAQAMAP PKFRSSVITV GPSHCGSNQS TNIHQATTLP VSMSDRSKNV EERLDTSSGG SSGCSYGRNN
201: KETVSGTSVT IDRKRKHVMD ADQESVSQSD IGLTSTDDQT MGNKSSQRSG STRRSRAAEV HNLSERRRRD RINERMKALQ ELIPHCSRTD KASILDEAID
301: YLKSLQMQLQ VMWMGSGMAA AAAAAASPMM FPGVQSSPYI NQMAMQSQMQ LSQFPVMNRS APQNHPGLVC QNPVQLQLQA QNQILSEQLA RYMGGIPQMP
401: PAGNQTVQQQ PADMLGFGSP AGPQSQLSAP ATTDSLHMGK IG
101: DPFESEFSSH FFSSIDHLGG PEKPRTIEET VKHEAQAMAP PKFRSSVITV GPSHCGSNQS TNIHQATTLP VSMSDRSKNV EERLDTSSGG SSGCSYGRNN
201: KETVSGTSVT IDRKRKHVMD ADQESVSQSD IGLTSTDDQT MGNKSSQRSG STRRSRAAEV HNLSERRRRD RINERMKALQ ELIPHCSRTD KASILDEAID
301: YLKSLQMQLQ VMWMGSGMAA AAAAAASPMM FPGVQSSPYI NQMAMQSQMQ LSQFPVMNRS APQNHPGLVC QNPVQLQLQA QNQILSEQLA RYMGGIPQMP
401: PAGNQTVQQQ PADMLGFGSP AGPQSQLSAP ATTDSLHMGK IG
Arabidopsis Description
PIF5Transcription factor PIF5 [Source:UniProtKB/Swiss-Prot;Acc:Q84LH8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.