Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- plastid 3
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra010591.1-P | Field mustard | nucleus, plastid | 100.0 | 100.0 |
| CDY22448 | Canola | nucleus, plastid | 89.44 | 86.65 |
| CDX75629 | Canola | nucleus | 76.25 | 75.14 |
| CDX69281 | Canola | nucleus, plastid | 76.83 | 75.07 |
| AT4G36930.1 | Thale cress | nucleus | 79.77 | 72.92 |
| GSMUA_Achr9P11300_001 | Banana | nucleus | 12.9 | 69.84 |
| CDY37185 | Canola | mitochondrion | 17.01 | 59.18 |
| TraesCS6A01G190600.1 | Wheat | nucleus | 18.77 | 49.61 |
| CDY24734 | Canola | plastid | 16.42 | 39.44 |
| CDY12804 | Canola | nucleus, plastid | 23.46 | 37.04 |
| CDY01438 | Canola | nucleus, plastid | 23.46 | 36.7 |
| Solyc02g093280.2.1 | Tomato | nucleus | 39.59 | 35.71 |
| PGSC0003DMT400010253 | Potato | nucleus | 39.3 | 35.64 |
| Os06t0164400-01 | Rice | cytosol, mitochondrion, nucleus | 20.23 | 35.03 |
| OQU75890 | Sorghum | nucleus | 26.98 | 31.62 |
| TraesCS7A01G126900.1 | Wheat | nucleus | 29.62 | 30.51 |
| TraesCS7D01G124700.1 | Wheat | nucleus | 30.21 | 30.47 |
| GSMUA_Achr10P... | Banana | plastid | 30.5 | 30.32 |
| GSMUA_Achr8P15670_001 | Banana | nucleus | 31.38 | 30.31 |
| TraesCS7B01G026300.1 | Wheat | nucleus | 29.91 | 30.09 |
| HORVU7Hr1G026560.2 | Barley | nucleus | 29.03 | 29.29 |
| Os02t0805250-00 | Rice | nucleus | 23.17 | 28.21 |
| KXG31309 | Sorghum | nucleus | 24.05 | 28.08 |
| Zm00001d045212_P001 | Maize | nucleus | 27.86 | 28.02 |
| HORVU6Hr1G088020.4 | Barley | nucleus | 23.46 | 27.03 |
| TraesCS6D01G357700.1 | Wheat | nucleus | 23.17 | 26.6 |
| TraesCS6A01G373500.2 | Wheat | nucleus | 23.17 | 26.07 |
| TraesCS6B01G411300.1 | Wheat | nucleus | 22.29 | 25.08 |
| Zm00001d018416_P001 | Maize | mitochondrion | 23.75 | 24.55 |
| CDY65390 | Canola | nucleus | 14.96 | 24.4 |
| CDY00603 | Canola | nucleus, plastid | 18.77 | 23.36 |
| CDY67566 | Canola | nucleus, plastid | 18.77 | 23.36 |
| CDY35224 | Canola | nucleus | 15.84 | 20.85 |
| CDY20289 | Canola | nucleus | 12.61 | 20.38 |
| CDX83214 | Canola | nucleus | 20.23 | 19.83 |
| CDX91917 | Canola | nucleus | 19.94 | 19.6 |
| CDX67873 | Canola | nucleus | 17.3 | 19.22 |
| CDX74328 | Canola | nucleus | 21.41 | 18.86 |
| CDY21498 | Canola | nucleus | 20.82 | 18.35 |
| CDY11836 | Canola | nucleus | 15.25 | 18.18 |
| CDY65446 | Canola | nucleus | 17.6 | 18.13 |
| CDY55014 | Canola | nucleus | 15.25 | 17.99 |
| CDY02785 | Canola | nucleus | 15.54 | 17.91 |
| CDY32733 | Canola | nucleus | 15.84 | 17.88 |
| CDX88653 | Canola | nucleus | 15.54 | 17.67 |
| CDY31989 | Canola | nucleus | 24.63 | 17.65 |
| CDY14866 | Canola | nucleus | 20.82 | 17.62 |
| CDY30375 | Canola | nucleus | 20.82 | 17.49 |
| CDY29961 | Canola | nucleus | 20.53 | 17.2 |
| CDX70453 | Canola | nucleus | 20.53 | 17.2 |
| CDY28232 | Canola | nucleus | 16.42 | 17.13 |
| CDY50911 | Canola | nucleus | 13.49 | 16.97 |
| CDY62262 | Canola | nucleus | 14.96 | 16.89 |
| CDY05725 | Canola | nucleus | 24.63 | 16.57 |
| CDX68710 | Canola | nucleus | 15.84 | 16.51 |
| CDX83509 | Canola | nucleus | 19.94 | 16.46 |
| CDY42809 | Canola | nucleus | 19.06 | 15.7 |
| CDY35220 | Canola | nucleus | 17.01 | 15.63 |
| CDX83349 | Canola | nucleus | 18.48 | 15.59 |
| CDX80064 | Canola | nucleus | 18.18 | 15.5 |
| CDY06026 | Canola | nucleus | 19.94 | 15.38 |
| CDY06870 | Canola | nucleus | 20.53 | 15.38 |
| CDX71916 | Canola | nucleus | 19.94 | 15.35 |
| CDY66254 | Canola | nucleus | 17.89 | 15.25 |
| CDX91293 | Canola | nucleus | 13.2 | 15.1 |
| CDY34780 | Canola | nucleus | 14.96 | 15.09 |
| CDY06865 | Canola | nucleus | 15.84 | 15.04 |
| CDX76819 | Canola | nucleus | 14.96 | 15.0 |
| CDY22636 | Canola | nucleus | 21.41 | 14.87 |
| CDY18011 | Canola | nucleus | 13.2 | 14.8 |
| CDX97278 | Canola | nucleus | 12.9 | 14.72 |
| CDX94963 | Canola | nucleus | 21.41 | 14.66 |
| CDY21898 | Canola | nucleus | 12.9 | 14.62 |
| GSMUA_Achr7P20810_001 | Banana | nucleus | 25.51 | 14.52 |
| CDY22062 | Canola | nucleus | 12.9 | 14.47 |
| CDY06358 | Canola | nucleus | 20.82 | 14.46 |
| CDY64745 | Canola | nucleus | 21.11 | 14.34 |
| CDX90930 | Canola | nucleus | 12.9 | 14.19 |
| CDY46133 | Canola | nucleus | 7.92 | 14.14 |
| CDY20290 | Canola | endoplasmic reticulum, extracellular | 8.21 | 13.79 |
| CDY18143 | Canola | nucleus | 12.32 | 13.73 |
| CDX89919 | Canola | nucleus | 12.32 | 13.5 |
| CDY06867 | Canola | nucleus | 19.06 | 13.49 |
| CDX76616 | Canola | extracellular | 13.78 | 13.13 |
| CDY11401 | Canola | extracellular | 13.2 | 12.78 |
| CDY46132 | Canola | endoplasmic reticulum | 5.87 | 11.36 |
| CDY35222 | Canola | nucleus | 17.89 | 10.57 |
Protein Annotations
| MapMan:15.5.32 | Gene3D:4.10.280.10 | GO:A0A078I4L0 | UniProt:A0A078I4L0 | EnsemblPlants:CDY44048 | ProteinID:CDY44048 |
| ProteinID:CDY44048.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0046983 |
| EnsemblPlantsGene:GSBRNA2T00079463001 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | PFAM:PF00010 | PFscan:PS50888 |
| PANTHER:PTHR12565 | PANTHER:PTHR12565:SF284 | SMART:SM00353 | SUPFAM:SSF47459 | UniParc:UPI00025461E4 | InterPro:bHLH_dom |
| SEG:seg | : | : | : | : | : |
Description
BnaA08g15580DBnaA08g15580D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I4L0]
Coordinates
chrLK032577:+:188172..189827
Molecular Weight (calculated)
36836.0 Da
IEP (calculated)
7.179
GRAVY (calculated)
-0.540
Length
341 amino acids
Sequence
(BLAST)
(BLAST)
001: MADKKLISSS SSSTTSIYDT RSSNNSNHHN PPSSSDEISL FLRHIFDRSS PLPSYYSPAT MTTVVHGDPH AENPRRFVSP QTSKVLVGSG VGSSSATACY
101: GFSRVGGGNN NIAQGNSSGT RVSSSAVGAS GNETDEYDCE SEEGVEVVFD DELLCKSRTS SKRCRAAEVH NLSEKKRRSR INEKMKALQS LIPNSNKTDK
201: ASMLDEAIEY LKQLQLQVQM LTMRNGVNLH PLCLPGTTLH PLQLSQLLPV VPPEATNDSL FNHTNHFAST SNAPAMINTD ALEPSIRSHF GPFPLLTSPA
301: EMSGEGVLTH SRLNVGHSNT NLTGRQAALN GQQPDLKDRL S
101: GFSRVGGGNN NIAQGNSSGT RVSSSAVGAS GNETDEYDCE SEEGVEVVFD DELLCKSRTS SKRCRAAEVH NLSEKKRRSR INEKMKALQS LIPNSNKTDK
201: ASMLDEAIEY LKQLQLQVQM LTMRNGVNLH PLCLPGTTLH PLQLSQLLPV VPPEATNDSL FNHTNHFAST SNAPAMINTD ALEPSIRSHF GPFPLLTSPA
301: EMSGEGVLTH SRLNVGHSNT NLTGRQAALN GQQPDLKDRL S
001: MISQREEREE KKQRVMGDKK LISSSSSSSV YDTRINHHLH HPPSSSDEIS QFLRHIFDRS SPLPSYYSPA TTTTTASLIG VHGSGDPHAD NSRSLVSHHP
101: PSDSVLMSKR VGDFSEVLIG GGSGSAAACF GFSGGGNNNN VQGNSSGTRV SSSSVGASGN ETDEYDCESE EGGEAVVDEA PSSKSGPSSR SSSKRCRAAE
201: VHNLSEKRRR SRINEKMKAL QSLIPNSNKT DKASMLDEAI EYLKQLQLQV QMLTMRNGIN LHPLCLPGTT LHPLQLSQIR PPEATNDPLL NHTNQFASTS
301: NAPEMINTVA SSYALEPSIR SHFGPFPLLT SPVEMSREGG LTHPRLNIGH SNANITGEQA LFDGQPDLKD RIT
101: PSDSVLMSKR VGDFSEVLIG GGSGSAAACF GFSGGGNNNN VQGNSSGTRV SSSSVGASGN ETDEYDCESE EGGEAVVDEA PSSKSGPSSR SSSKRCRAAE
201: VHNLSEKRRR SRINEKMKAL QSLIPNSNKT DKASMLDEAI EYLKQLQLQV QMLTMRNGIN LHPLCLPGTT LHPLQLSQIR PPEATNDPLL NHTNQFASTS
301: NAPEMINTVA SSYALEPSIR SHFGPFPLLT SPVEMSREGG LTHPRLNIGH SNANITGEQA LFDGQPDLKD RIT
Arabidopsis Description
SPTSPT [Source:UniProtKB/TrEMBL;Acc:A0A178UVX7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.