Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX75629 | Canola | nucleus | 75.07 | 80.92 |
| CDY22448 | Canola | nucleus, plastid | 75.87 | 80.4 |
| CDX69281 | Canola | nucleus, plastid | 74.8 | 79.94 |
| Bra010591.1-P | Field mustard | nucleus, plastid | 72.92 | 79.77 |
| CDY44048 | Canola | nucleus, plastid | 72.92 | 79.77 |
| Bra011740.1-P | Field mustard | nucleus, plastid | 75.6 | 79.66 |
| GSMUA_Achr9P11300_001 | Banana | nucleus | 12.06 | 71.43 |
| TraesCS6A01G190600.1 | Wheat | nucleus | 17.69 | 51.16 |
| AT5G67110.1 | Thale cress | nucleus | 22.52 | 40.0 |
| Solyc02g093280.2.1 | Tomato | nucleus | 38.61 | 38.1 |
| PGSC0003DMT400010253 | Potato | nucleus | 38.34 | 38.03 |
| Os06t0164400-01 | Rice | cytosol, mitochondrion, nucleus | 19.3 | 36.55 |
| OQU75890 | Sorghum | nucleus | 24.66 | 31.62 |
| GSMUA_Achr8P15670_001 | Banana | nucleus | 29.49 | 31.16 |
| GSMUA_Achr10P... | Banana | plastid | 28.15 | 30.61 |
| TraesCS7D01G124700.1 | Wheat | nucleus | 27.61 | 30.47 |
| TraesCS7A01G126900.1 | Wheat | nucleus | 26.81 | 30.21 |
| TraesCS7B01G026300.1 | Wheat | nucleus | 27.35 | 30.09 |
| HORVU7Hr1G026560.2 | Barley | nucleus | 26.54 | 29.29 |
| Os02t0805250-00 | Rice | nucleus | 21.72 | 28.93 |
| KXG31309 | Sorghum | nucleus | 22.25 | 28.42 |
| Zm00001d045212_P001 | Maize | nucleus | 25.2 | 27.73 |
| HORVU6Hr1G088020.4 | Barley | nucleus | 21.45 | 27.03 |
| TraesCS6D01G357700.1 | Wheat | nucleus | 21.45 | 26.94 |
| TraesCS6A01G373500.2 | Wheat | nucleus | 21.45 | 26.4 |
| Zm00001d018416_P001 | Maize | mitochondrion | 22.52 | 25.45 |
| TraesCS6B01G411300.1 | Wheat | nucleus | 20.38 | 25.08 |
| AT4G28815.1 | Thale cress | vacuole | 15.01 | 18.24 |
| AT4G00050.1 | Thale cress | nucleus | 19.3 | 18.05 |
| AT5G58010.1 | Thale cress | nucleus | 14.21 | 17.85 |
| AT2G20180.2 | Thale cress | nucleus | 22.25 | 17.36 |
| AT4G28790.1 | Thale cress | nucleus | 18.77 | 16.95 |
| AT3G62090.2 | Thale cress | nucleus | 15.82 | 16.25 |
| AT2G46970.1 | Thale cress | nucleus | 17.96 | 16.11 |
| AT2G24260.1 | Thale cress | nucleus | 14.75 | 15.71 |
| AT2G43010.5 | Thale cress | extracellular, vacuole | 19.84 | 15.68 |
| GSMUA_Achr7P20810_001 | Banana | nucleus | 24.66 | 15.36 |
| AT4G30980.2 | Thale cress | nucleus, plastid | 14.48 | 15.08 |
| AT3G59060.2 | Thale cress | nucleus | 17.69 | 14.86 |
| AT1G09530.3 | Thale cress | nucleus | 20.64 | 14.69 |
| AT4G02590.1 | Thale cress | nucleus | 11.26 | 13.55 |
| AT4G28800.2 | Thale cress | nucleus | 15.82 | 12.91 |
| AT4G28811.1 | Thale cress | nucleus | 18.23 | 12.5 |
| AT1G03040.3 | Thale cress | nucleus | 10.99 | 12.31 |
Protein Annotations
| MapMan:15.5.32 | Gene3D:4.10.280.10 | EntrezGene:829847 | UniProt:A0A178UVX7 | ProteinID:AEE86720.1 | EMBL:AF319540 |
| EMBL:AK229267 | ArrayExpress:AT4G36930 | EnsemblPlantsGene:AT4G36930 | RefSeq:AT4G36930 | TAIR:AT4G36930 | RefSeq:AT4G36930-TAIR-G |
| EnsemblPlants:AT4G36930.1 | TAIR:AT4G36930.1 | Unigene:At.4639 | EMBL:BT026462 | ProteinID:CAB16798.1 | ProteinID:CAB80359.1 |
| ncoils:Coil | GO:GO:0000003 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0006950 | GO:GO:0007275 | GO:GO:0007623 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009409 | GO:GO:0009628 | GO:GO:0009791 |
| GO:GO:0009908 | GO:GO:0009987 | GO:GO:0010114 | GO:GO:0010154 | GO:GO:0010187 | GO:GO:0046983 |
| GO:GO:0048440 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | RefSeq:NP_568010.1 | ProteinID:OAO98089.1 |
| PFAM:PF00010 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 |
| PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 |
| PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 |
| PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 |
| PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 |
| PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 |
| PO:PO:0025281 | PO:PO:0025374 | PFscan:PS50888 | PANTHER:PTHR12565 | PANTHER:PTHR12565:SF284 | UniProt:Q9FUA4 |
| SMART:SM00353 | Symbol:SPT | SUPFAM:SSF47459 | UniParc:UPI00000A9DC1 | InterPro:bHLH_dom | SEG:seg |
Description
SPTSPT [Source:UniProtKB/TrEMBL;Acc:A0A178UVX7]
Coordinates
chr4:+:17414083..17416386
Molecular Weight (calculated)
40299.8 Da
IEP (calculated)
6.837
GRAVY (calculated)
-0.647
Length
373 amino acids
Sequence
(BLAST)
(BLAST)
001: MISQREEREE KKQRVMGDKK LISSSSSSSV YDTRINHHLH HPPSSSDEIS QFLRHIFDRS SPLPSYYSPA TTTTTASLIG VHGSGDPHAD NSRSLVSHHP
101: PSDSVLMSKR VGDFSEVLIG GGSGSAAACF GFSGGGNNNN VQGNSSGTRV SSSSVGASGN ETDEYDCESE EGGEAVVDEA PSSKSGPSSR SSSKRCRAAE
201: VHNLSEKRRR SRINEKMKAL QSLIPNSNKT DKASMLDEAI EYLKQLQLQV QMLTMRNGIN LHPLCLPGTT LHPLQLSQIR PPEATNDPLL NHTNQFASTS
301: NAPEMINTVA SSYALEPSIR SHFGPFPLLT SPVEMSREGG LTHPRLNIGH SNANITGEQA LFDGQPDLKD RIT
101: PSDSVLMSKR VGDFSEVLIG GGSGSAAACF GFSGGGNNNN VQGNSSGTRV SSSSVGASGN ETDEYDCESE EGGEAVVDEA PSSKSGPSSR SSSKRCRAAE
201: VHNLSEKRRR SRINEKMKAL QSLIPNSNKT DKASMLDEAI EYLKQLQLQV QMLTMRNGIN LHPLCLPGTT LHPLQLSQIR PPEATNDPLL NHTNQFASTS
301: NAPEMINTVA SSYALEPSIR SHFGPFPLLT SPVEMSREGG LTHPRLNIGH SNANITGEQA LFDGQPDLKD RIT
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.