Factsheet for Bra011740.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 5
plastid 3
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra012128.1-P
Bra028620.1-P
Bra030002.1-P
Bra036071.1-P
Bra036801.1-P
Bra037128.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G36930.1	Bra030002.1-P	AT3G50330.1	17855426
AT4G36930.1	Bra036071.1-P	AT3G50330.1	17855426
AT4G36930.1	Bra028620.1-P	AT5G09750.1	17855426
AT4G36930.1	Bra012128.1-P	AT5G67060.1	17855426
AT4G36930.1	Bra036801.1-P	AT5G67060.1	17855426
AT4G36930.1	Bra037128.1-P	AT5G67060.1	17855426

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX75629	Canola	nucleus	95.2	97.4
CDX69281	Canola	nucleus, plastid	94.63	95.99
Bra010591.1-P	Field mustard	nucleus, plastid	74.58	77.42
AT4G36930.1	Thale cress	nucleus	79.66	75.6
GSMUA_Achr9P11300_001	Banana	nucleus	12.71	71.43
TraesCS6A01G190600.1	Wheat	nucleus	18.36	50.39
Bra012133.1-P	Field mustard	nucleus, plastid	24.86	41.12
PGSC0003DMT400010253	Potato	nucleus	39.55	37.23
Solyc02g093280.2.1	Tomato	nucleus	38.98	36.51
Os06t0164400-01	Rice	cytosol, mitochondrion, nucleus	19.77	35.53
GSMUA_Achr8P15670_001	Banana	nucleus	31.07	31.16
GSMUA_Achr10P...	Banana	plastid	29.94	30.9
OQU75890	Sorghum	nucleus	25.14	30.58
Os02t0805250-00	Rice	nucleus	22.88	28.93
TraesCS7A01G126900.1	Wheat	nucleus	26.84	28.7
TraesCS7D01G124700.1	Wheat	nucleus	27.4	28.7
TraesCS7B01G026300.1	Wheat	nucleus	27.12	28.32
KXG31309	Sorghum	nucleus	23.16	28.08
HORVU7Hr1G026560.2	Barley	nucleus	26.27	27.51
HORVU6Hr1G088020.4	Barley	nucleus	22.32	26.69
TraesCS6D01G357700.1	Wheat	nucleus	22.32	26.6
Zm00001d045212_P001	Maize	nucleus	25.42	26.55
TraesCS6A01G373500.2	Wheat	nucleus	22.32	26.07
Zm00001d018416_P001	Maize	mitochondrion	23.45	25.15
Bra037312.1-P	Field mustard	nucleus	14.69	24.88
TraesCS6B01G411300.1	Wheat	nucleus	21.19	24.75
Bra011237.1-P	Field mustard	plastid	13.28	21.76
Bra003483.1-P	Field mustard	nucleus	16.95	19.54
Bra000560.1-P	Field mustard	nucleus	20.9	19.07
Bra020398.1-P	Field mustard	nucleus	14.97	18.93
Bra002679.1-P	Field mustard	nucleus	15.25	18.69
Bra036256.1-P	Field mustard	nucleus	11.86	18.42
Bra037742.1-P	Field mustard	nucleus	20.06	17.49
Bra006788.1-P	Field mustard	nucleus	14.69	17.33
Bra000283.1-P	Field mustard	nucleus	19.21	16.46
Bra018539.1-P	Field mustard	nucleus	11.3	15.75
Bra004489.1-P	Field mustard	nucleus	17.51	15.5
Bra007430.1-P	Field mustard	nucleus	18.64	15.49
Bra007863.1-P	Field mustard	nucleus	14.41	15.09
GSMUA_Achr7P20810_001	Banana	nucleus	25.42	15.03
Bra000436.1-P	Field mustard	nucleus	16.67	14.6
Bra020017.1-P	Field mustard	nucleus	20.34	14.57
Bra031668.1-P	Field mustard	nucleus	20.06	14.43
Bra032111.1-P	Field mustard	nucleus	14.12	14.37
Bra000872.1-P	Field mustard	nucleus	12.43	14.24
Bra033368.1-P	Field mustard	nucleus	11.58	13.18
Bra011061.1-P	Field mustard	nucleus	15.82	10.83
Bra011062.1-P	Field mustard	cytosol	13.84	10.7
Bra007660.1-P	Field mustard	nucleus	12.15	10.19

Protein Annotations

EnsemblPlants:Bra011740.1	EnsemblPlants:Bra011740.1-P	EnsemblPlantsGene:Bra011740	Gene3D:4.10.280.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	InterPro:bHLH_dom
ncoils:Coil	PANTHER:PTHR12565	PANTHER:PTHR12565:SF284	PFAM:PF00010	PFscan:PS50888	SEG:seg
SMART:SM00353	SUPFAM:SSF47459	UniParc:UPI00025467DB	UniProt:M4D5I3	MapMan:15.5.32	:

Description

AT4G36930 (E=1e-122) SPT | SPT (SPATULA); DNA binding / transcription factor

Coordinates

chrA01:+:808329..810040

Molecular Weight (calculated)

38368.3 Da

IEP (calculated)

6.657

GRAVY (calculated)

-0.708

Length

354 amino acids

Sequence
(BLAST)

001: MGDNKKLISS SSSSTNTSIY DTRGNNSNNH HHHPPSSSDE ISQFLRHIFD RSSPLPSYYS PAMTTTASTA AIEVQGDPHA DNPRSFVSTT PASKRAVDFS
101: DVLIGSAAAS AAAGCYGFPG GGNNIAQGSS SGTRVSSSSL GASGNETDEY DCESEEGVEA VVDDELPSKS RNSSKRCRAA EVHNLSEKRR RSRINEKMKA
201: LQSLIPNSNK TDKASMLDEA IEYLKQLQLQ VQMLTMRNGL NLHPLCLPGT SLHPLQLSQI RPPETTGDPL LNHSNQYAST SNAPEMINMP SAYTMEPSIR
301: SHFGPFPHFS PHVEMSREGG LTHQRLNTSH PNANLTGEHA AFDGQHPEIK DRLT

Best Arabidopsis Sequence Match ( AT4G36930.1 )
(BLAST)

001: MISQREEREE KKQRVMGDKK LISSSSSSSV YDTRINHHLH HPPSSSDEIS QFLRHIFDRS SPLPSYYSPA TTTTTASLIG VHGSGDPHAD NSRSLVSHHP
101: PSDSVLMSKR VGDFSEVLIG GGSGSAAACF GFSGGGNNNN VQGNSSGTRV SSSSVGASGN ETDEYDCESE EGGEAVVDEA PSSKSGPSSR SSSKRCRAAE
201: VHNLSEKRRR SRINEKMKAL QSLIPNSNKT DKASMLDEAI EYLKQLQLQV QMLTMRNGIN LHPLCLPGTT LHPLQLSQIR PPEATNDPLL NHTNQFASTS
301: NAPEMINTVA SSYALEPSIR SHFGPFPLLT SPVEMSREGG LTHPRLNIGH SNANITGEQA LFDGQPDLKD RIT

Arabidopsis Description

SPTSPT [Source:UniProtKB/TrEMBL;Acc:A0A178UVX7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.