Factsheet for Bra007660.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY11401	Canola	extracellular	78.91	94.6
Bra003483.1-P	Field mustard	nucleus	51.66	71.01
AT3G62090.2	Thale cress	nucleus	54.5	63.36
Bra004489.1-P	Field mustard	nucleus	35.31	37.25
Bra000436.1-P	Field mustard	nucleus	35.07	36.63
KRH69138	Soybean	cytosol, nucleus, vacuole	9.95	23.33
VIT_07s0005g02510.t01	Wine grape	nucleus	10.66	22.5
Bra037312.1-P	Field mustard	nucleus	9.95	20.1
KRH33663	Soybean	nucleus	17.3	16.26
Bra011237.1-P	Field mustard	plastid	8.06	15.74
Bra000560.1-P	Field mustard	nucleus	14.46	15.72
Bra012133.1-P	Field mustard	nucleus, plastid	7.58	14.95
Bra000283.1-P	Field mustard	nucleus	14.22	14.53
Bra007430.1-P	Field mustard	nucleus	14.22	14.08
Bra036256.1-P	Field mustard	nucleus	7.35	13.6
Bra037742.1-P	Field mustard	nucleus	13.03	13.55
Bra020398.1-P	Field mustard	nucleus	8.77	13.21
Bra010591.1-P	Field mustard	nucleus, plastid	10.66	13.2
KRH68348	Soybean	nucleus	16.11	13.15
Zm00001d024783_P001	Maize	nucleus	15.64	13.07
KRG96615	Soybean	nucleus	15.88	12.93
Bra018539.1-P	Field mustard	nucleus	7.58	12.6
Bra020017.1-P	Field mustard	nucleus	14.69	12.55
Os05t0139100-01	Rice	nucleus	14.93	12.48
Bra002679.1-P	Field mustard	nucleus	8.53	12.46
TraesCS1D01G084200.1	Wheat	nucleus	14.69	12.35
TraesCS1B01G100400.2	Wheat	nucleus	14.69	12.35
Bra011740.1-P	Field mustard	nucleus, plastid	10.19	12.15
Bra007863.1-P	Field mustard	nucleus	9.72	12.13
TraesCS1A01G083000.1	Wheat	nucleus	14.46	12.03
Bra006788.1-P	Field mustard	nucleus	8.53	12.0
Bra032111.1-P	Field mustard	nucleus	9.72	11.78
HORVU1Hr1G017900.1	Barley	nucleus	13.51	11.56
Bra031668.1-P	Field mustard	nucleus	13.27	11.38
Zm00001d040536_P005	Maize	nucleus	15.17	11.29
Bra033368.1-P	Field mustard	nucleus	8.29	11.25
KXG32305	Sorghum	nucleus	15.88	11.09
PGSC0003DMT400047079	Potato	nucleus	18.48	11.02
GSMUA_Achr1P19000_001	Banana	mitochondrion, nucleus	15.4	10.96
Bra000872.1-P	Field mustard	nucleus	7.82	10.68
KXG21255	Sorghum	nucleus	17.3	10.61
Solyc01g102300.2.1	Tomato	nucleus	17.54	10.35
Zm00001d008205_P001	Maize	nucleus	15.64	10.34
Os01t0286100-01	Rice	nucleus	15.4	10.2
Bra011061.1-P	Field mustard	nucleus	12.32	10.06
Bra011062.1-P	Field mustard	cytosol	9.24	8.52

Protein Annotations

EnsemblPlants:Bra007660.1	EnsemblPlants:Bra007660.1-P	EnsemblPlantsGene:Bra007660	Gene3D:4.10.280.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	InterPro:bHLH_dom
ncoils:Coil	PANTHER:PTHR12565	PANTHER:PTHR12565:SF194	PFscan:PS50888	SEG:seg	SUPFAM:SSF47459
UniParc:UPI0002542AB4	UniProt:M4CTW6	MapMan:15.5.32	:	:	:

Description

AT3G62090 (E=2e-108) PIL2, PIF6 | PIL2 (PHYTOCHROME INTERACTING FACTOR 3-LIKE 2); protein binding / transcription factor

Coordinates

chrA09:-:30300632..30303423

Molecular Weight (calculated)

47008.5 Da

IEP (calculated)

5.496

GRAVY (calculated)

-0.680

Length

422 amino acids

Sequence
(BLAST)

001: MKLEEPPSPG ETQSEPIKTS VSSEALQTAR LHSKADHRQS QLWYQSFDKA TVDGTSETRR REANLLNAKG SGDGTDAHAP AVRRRKLTDQ EYMELVFENG
101: QILAKSQRSN GFSMHNQRTK SIVDLYEAEY NEDFKKTIHG ADTSDKNLVD TQVVPEPLVV AAYETNMLMN QLNLIQSLKA SSSKRMVVDY ENRKDIVPPD
201: EQSVVAERSV ELGYDSTDFT EDSEESTYQS SSLDDVRPQV PARTSNILVK RRRKQKETND INKKMRNLQD LLPNSQKEDN EALLDEAINY MTTLQHQVQM
301: MTMGKRFVTP ATMLPLGPQY SQMGLATGMQ MGVPQLLPAP VLGAGLPLVN TQADVLRVLN HPVLMPIQNS APFTPMQNYL PQYVPPACAA FPNLIPNSTT
401: SSNLDDARTH GGNLSGKESD KP

Best Arabidopsis Sequence Match ( AT3G62090.2 )
(BLAST)

001: MMFLPTDYCC RLSDQEYMEL VFENGQILAK GQRSNVSLHN QRTKSIMDLY EAEYNEDFMK SIIHGGGGAI TNLGDTQVVP QSHVAAAHET NMLESNKHVD
101: DSETLKASSS KRMMVDYHNR KKIKFIPPDE QSVVADRSFK LGFDTSSVGF TEDSEGSMYL SSSLDDESDD ARPQVPARTR KALVKRKRNA EAYNSPERNQ
201: RNDINKKMRT LQNLLPNSHK DDNESMLDEA INYMTNLQLQ VQMMTMGNRF VTPSMMMPLG PNYSQMGLAM GVGMQMGEQQ FLPAHVLGAG LPGINDSADM
301: LRFLNHPGLM PMQNSAPFIP TENCSPQSVP PSCAAFPNQI PNPNSLSNLD GATLHKKSRK TNR

Arabidopsis Description

PIF6PIL2 [Source:UniProtKB/TrEMBL;Acc:A0A178VFI3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.