Subcellular Localization
min:
: max
Winner_takes_all: vacuole, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 2
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G46970.1 | KRH03510 | AT5G61380.1 | 11828029 |
| AT2G46970.1 | KRH54582 | AT5G61380.1 | 11828029 |
| AT2G46970.1 | KRH56889 | AT5G61380.1 | 11828029 |
| AT2G46970.1 | KRH63298 | AT5G61380.1 | 11828029 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH33663 | Soybean | nucleus | 86.67 | 34.74 |
| KRH71636 | Soybean | golgi, plasma membrane, vacuole | 21.67 | 25.49 |
| VIT_07s0005g02510.t01 | Wine grape | nucleus | 26.11 | 23.5 |
| KRH76132 | Soybean | nucleus | 18.33 | 18.03 |
| KRH68348 | Soybean | nucleus | 48.89 | 17.02 |
| KRH72281 | Soybean | nucleus, plastid | 11.67 | 16.8 |
| KRH04711 | Soybean | plastid | 14.44 | 16.25 |
| KRG96615 | Soybean | nucleus | 46.11 | 16.02 |
| KRH28453 | Soybean | nucleus | 25.0 | 15.46 |
| KRH04595 | Soybean | nucleus | 22.78 | 15.07 |
| KRH05665 | Soybean | nucleus | 23.89 | 14.48 |
| KRH15381 | Soybean | nucleus | 23.33 | 14.14 |
| CDX67873 | Canola | nucleus | 23.33 | 13.68 |
| Bra003483.1-P | Field mustard | nucleus | 23.33 | 13.68 |
| CDY65446 | Canola | nucleus | 23.89 | 12.99 |
| CDX76616 | Canola | extracellular | 23.89 | 12.01 |
| CDY11401 | Canola | extracellular | 23.33 | 11.93 |
| AT3G62090.2 | Thale cress | nucleus | 23.89 | 11.85 |
| KRH77016 | Soybean | nucleus | 23.89 | 11.47 |
| AT2G46970.1 | Thale cress | nucleus | 26.11 | 11.3 |
| HORVU1Hr1G017900.1 | Barley | nucleus | 30.56 | 11.16 |
| TraesCS1D01G084200.1 | Wheat | nucleus | 31.11 | 11.16 |
| TraesCS1B01G100400.2 | Wheat | nucleus | 31.11 | 11.16 |
| Os05t0139100-01 | Rice | nucleus | 31.11 | 11.09 |
| TraesCS1A01G083000.1 | Wheat | nucleus | 31.11 | 11.05 |
| Bra004489.1-P | Field mustard | nucleus | 24.44 | 11.0 |
| CDX80064 | Canola | nucleus | 24.44 | 11.0 |
| CDX83349 | Canola | nucleus | 23.33 | 10.4 |
| Bra000436.1-P | Field mustard | nucleus | 23.33 | 10.4 |
| CDY66254 | Canola | nucleus | 22.78 | 10.25 |
| KRH54630 | Soybean | nucleus | 22.78 | 10.2 |
| KRH71345 | Soybean | nucleus | 10.0 | 10.17 |
| KRH67519 | Soybean | nucleus | 28.33 | 10.16 |
| KRH55381 | Soybean | cytosol | 3.89 | 10.14 |
| Zm00001d024783_P001 | Maize | nucleus | 28.33 | 10.1 |
| CDY50911 | Canola | nucleus | 15.0 | 9.96 |
| Bra007660.1-P | Field mustard | nucleus | 23.33 | 9.95 |
| KXG32305 | Sorghum | nucleus | 33.33 | 9.93 |
| KRH03075 | Soybean | nucleus | 20.0 | 9.81 |
| KRH32290 | Soybean | nucleus | 26.67 | 9.78 |
| Zm00001d040536_P005 | Maize | nucleus | 30.56 | 9.7 |
| KRH19683 | Soybean | nucleus | 27.22 | 9.63 |
| KRG95612 | Soybean | nucleus | 15.56 | 9.59 |
| KRH32094 | Soybean | nucleus | 15.0 | 9.54 |
| KRH68390 | Soybean | nucleus | 32.78 | 9.46 |
| Zm00001d008205_P001 | Maize | nucleus | 32.78 | 9.25 |
| KRH67287 | Soybean | nucleus | 15.0 | 9.25 |
| Os01t0286100-01 | Rice | nucleus | 31.67 | 8.95 |
| KRH73584 | Soybean | nucleus | 27.22 | 8.72 |
| KRG88937 | Soybean | nucleus | 22.22 | 8.6 |
| GSMUA_Achr1P19000_001 | Banana | mitochondrion, nucleus | 28.33 | 8.6 |
| KRH45975 | Soybean | nucleus | 25.0 | 8.57 |
| KRH14535 | Soybean | nucleus | 26.67 | 8.54 |
| KRH33733 | Soybean | nucleus | 32.78 | 8.54 |
| KRG96663 | Soybean | nucleus | 30.0 | 8.53 |
| KRH75301 | Soybean | nucleus | 21.67 | 8.52 |
| KRH65412 | Soybean | nucleus | 18.33 | 8.31 |
| KRG99030 | Soybean | nucleus | 25.0 | 8.23 |
| KRG90443 | Soybean | nucleus | 32.22 | 8.03 |
| KRH34087 | Soybean | nucleus | 14.44 | 7.93 |
| KRG92679 | Soybean | nucleus | 14.44 | 7.83 |
| PGSC0003DMT400047079 | Potato | nucleus | 30.56 | 7.77 |
| KXG21255 | Sorghum | nucleus | 29.44 | 7.7 |
| KRH12909 | Soybean | nucleus | 20.0 | 7.58 |
| Solyc01g102300.2.1 | Tomato | nucleus | 30.0 | 7.55 |
| KRH37912 | Soybean | nucleus | 20.0 | 7.35 |
| KRH71344 | Soybean | cytosol | 2.78 | 6.67 |
| KRH05051 | Soybean | nucleus | 2.22 | 1.0 |
Protein Annotations
| EMBL:ACUP02000689 | EnsemblPlants:KRH69138 | EnsemblPlantsGene:GLYMA_02G007000 | EntrezGene:100783269 | Gene3D:4.10.280.10 | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 |
| InterPro:bHLH_dom | PANTHER:PTHR12565 | PANTHER:PTHR12565:SF284 | PFscan:PS50888 | ProteinID:KRH69138 | ProteinID:KRH69138.1 |
| SUPFAM:SSF47459 | UniParc:UPI000296E26D | UniProt:K7K5T8 | MapMan:15.5.32 | : | : |
Description
hypothetical protein
Coordinates
chr2:-:743761..745589
Molecular Weight (calculated)
19815.5 Da
IEP (calculated)
8.115
GRAVY (calculated)
-0.007
Length
180 amino acids
Sequence
(BLAST)
(BLAST)
001: MRILKELIPN CNKTDKASML DDAIEYLKTL KLQIQMMSMD AGFCIPFMML RNAAHHMMNT PLLHQLMGLG MGFRPDTAIP CSLPQFPITP LPAITDNRVH
101: FFGFPNQVPP MPISHAPFIP MLGNPSTQTP LATSTAINLA ENPASSQLTT LMASVPKNLY LSGQSEYATK QAPSQVSLHH
101: FFGFPNQVPP MPISHAPFIP MLGNPSTQTP LATSTAINLA ENPASSQLTT LMASVPKNLY LSGQSEYATK QAPSQVSLHH
001: MPLFELFRLT KAKLESAQDR NPSPPVDEVV ELVWENGQIS TQSQSSRSRN IPPPQANSSR AREIGNGSKT TMVDEIPMSV PSLMTGLSQD DDFVPWLNHH
101: PSLDGYCSDF LRDVSSPVTV NEQESDMAVN QTAFPLFQRR KDGNESAPAA SSSQYNGFQS HSLYGSDRAR DLPSQQTNPD RFTQTQEPLI TSNKPSLVNF
201: SHFLRPATFA KTTNNNLHDT KEKSPQSPPN VFQTRVLGAK DSEDKVLNES VASATPKDNQ KACLISEDSC RKDQESEKAV VCSSVGSGNS LDGPSESPSL
301: SLKRKHSNIQ DIDCHSEDVE EESGDGRKEA GPSRTGLGSK RSRSAEVHNL SERRRRDRIN EKMRALQELI PNCNKVDKAS MLDEAIEYLK SLQLQVQIMS
401: MASGYYLPPA VMFPPGMGHY PAAAAAMAMG MGMPYAMGLP DLSRGGSSVN HGPQFQVSGM QQQPVAMGIP RVSGGGIFAG SSTIGNGSTR DLSGSKDQTT
501: TNNNSNLKPI KRKQGSSDQF CGSS
101: PSLDGYCSDF LRDVSSPVTV NEQESDMAVN QTAFPLFQRR KDGNESAPAA SSSQYNGFQS HSLYGSDRAR DLPSQQTNPD RFTQTQEPLI TSNKPSLVNF
201: SHFLRPATFA KTTNNNLHDT KEKSPQSPPN VFQTRVLGAK DSEDKVLNES VASATPKDNQ KACLISEDSC RKDQESEKAV VCSSVGSGNS LDGPSESPSL
301: SLKRKHSNIQ DIDCHSEDVE EESGDGRKEA GPSRTGLGSK RSRSAEVHNL SERRRRDRIN EKMRALQELI PNCNKVDKAS MLDEAIEYLK SLQLQVQIMS
401: MASGYYLPPA VMFPPGMGHY PAAAAAMAMG MGMPYAMGLP DLSRGGSSVN HGPQFQVSGM QQQPVAMGIP RVSGGGIFAG SSTIGNGSTR DLSGSKDQTT
501: TNNNSNLKPI KRKQGSSDQF CGSS
Arabidopsis Description
PIF3Transcription factor PIF3 [Source:UniProtKB/Swiss-Prot;Acc:O80536]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.