CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG96663	Soybean	nucleus	85.9	84.68
KRH33733	Soybean	nucleus	52.56	47.47
KRG90443	Soybean	nucleus	54.49	47.09
KRH71636	Soybean	golgi, plasma membrane, vacuole	10.9	44.44
VIT_07s0005g02510.t01	Wine grape	nucleus	13.62	42.5
KRH05051	Soybean	nucleus	26.6	41.5
Bra020017.1-P	Field mustard	nucleus	28.04	35.43
CDY22636	Canola	nucleus	27.72	35.23
CDY64745	Canola	nucleus	27.88	34.66
CDY06358	Canola	nucleus	27.08	34.42
KRH04711	Soybean	plastid	8.81	34.38
Bra031668.1-P	Field mustard	nucleus	26.92	34.15
AT1G09530.3	Thale cress	nucleus	28.37	33.78
CDX94963	Canola	nucleus	26.92	33.73
KRH69138	Soybean	cytosol, nucleus, vacuole	9.46	32.78
PGSC0003DMT400047079	Potato	nucleus	36.7	32.34
Solyc01g102300.2.1	Tomato	nucleus	35.58	31.05
KRH04595	Soybean	nucleus	12.98	29.78
KRH72281	Soybean	nucleus, plastid	5.93	29.6
KRH76132	Soybean	nucleus	8.17	27.87
KRH55381	Soybean	cytosol	3.04	27.54
Zm00001d040536_P005	Maize	nucleus	25.0	27.51
KRH33663	Soybean	nucleus	19.39	26.95
GSMUA_Achr1P19000_001	Banana	mitochondrion, nucleus	25.48	26.81
KXG32305	Sorghum	nucleus	25.48	26.32
KRH05665	Soybean	nucleus	12.5	26.26
Os05t0139100-01	Rice	nucleus	20.51	25.35
KRH32290	Soybean	nucleus	19.87	25.25
KRH28453	Soybean	nucleus	11.7	25.09
Zm00001d024783_P001	Maize	nucleus	20.19	24.95
KRH15381	Soybean	nucleus	11.86	24.92
TraesCS1B01G100400.2	Wheat	nucleus	20.03	24.9
Os01t0286100-01	Rice	nucleus	25.32	24.8
KRH68348	Soybean	nucleus	20.51	24.76
KRH19683	Soybean	nucleus	20.19	24.75
HORVU1Hr1G017900.1	Barley	nucleus	19.55	24.75
TraesCS1D01G084200.1	Wheat	nucleus	19.87	24.7
TraesCS1A01G083000.1	Wheat	nucleus	19.87	24.46
Zm00001d008205_P001	Maize	nucleus	25.0	24.45
KRH45975	Soybean	nucleus	20.03	23.81
KRH67519	Soybean	nucleus	18.75	23.31
KRG96615	Soybean	nucleus	19.07	22.97
KRG99030	Soybean	nucleus	19.55	22.3
KRH77016	Soybean	nucleus	13.3	22.13
KRH14535	Soybean	nucleus	19.39	21.53
KRH54630	Soybean	nucleus	13.62	21.14
KRH73584	Soybean	nucleus	18.43	20.46
KRH71345	Soybean	nucleus	5.77	20.34
KXG21255	Sorghum	nucleus	20.99	19.04
KRH75301	Soybean	nucleus	13.78	18.78
KRG88937	Soybean	nucleus	13.46	18.06
KRH65412	Soybean	nucleus	11.22	17.63
KRG92679	Soybean	nucleus	8.33	15.66
KRH32094	Soybean	nucleus	7.05	15.55
KRH34087	Soybean	nucleus	8.01	15.24
KRG95612	Soybean	nucleus	6.89	14.73
KRH67287	Soybean	nucleus	6.89	14.73
KRH03075	Soybean	nucleus	8.65	14.71
KRH12909	Soybean	nucleus	9.46	12.42
KRH37912	Soybean	nucleus	9.29	11.84
KRH71344	Soybean	cytosol	0.64	5.33

Protein Annotations

MapMan:15.5.32	MapMan:26.1.1.4	Gene3D:4.10.280.10	UniProt:A0A0R0KNC3	EMBL:ACUP02002109	ncoils:Coil
EnsemblPlantsGene:GLYMA_03G227800	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004518
GO:GO:0004519	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009451	GO:GO:0009987	GO:GO:0016787
GO:GO:0043231	GO:GO:0046983	GO:GO:0090305	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638
EnsemblPlants:KRH68390	ProteinID:KRH68390	ProteinID:KRH68390.1	PFAM:PF00010	PFscan:PS50888	PANTHER:PTHR12565
PANTHER:PTHR12565:SF284	SMART:SM00353	SUPFAM:SSF47459	UniParc:UPI0006ED7FDF	InterPro:bHLH_dom	SEG:seg

Description

hypothetical protein

Coordinates

chr3:-:42979880..42984000

Molecular Weight (calculated)

67835.8 Da

IEP (calculated)

6.102

GRAVY (calculated)

-0.559

Length

624 amino acids

Sequence
(BLAST)

001: MPLHELYRVA KGKLDDPIEM NNNTTCAVDQ SSVPNNDLFE LIWEKGQISV QGQSSRARVS PNCKTLPSHT PIGYANNAIT TNTRMGKCGN LGAELNEIRR
101: LVPSGEVDLS EEEEDMVMPW FSYGRDDDSL QHGYSTDFFH EPSGVMNELS ASNNFSLLDR RNNCSKIFRD THKHSPFASV RSRVADIAEN NANNVPPGSS
201: GFSSLKMEKQ GPVMCSNNSS TMMNFSHFAK PAAIVKANLE NIGLASRSGS VGIKIKSADE STKVELSRGE RPKKPAIHNQ DQDVTVSTKG DPSCNDVSKV
301: DQNQTSNIVV GESGNKGHEA VEKGVEPAVV SSSVCSGNDT EDSESQSEDV EEESVGVKKE VHARGFGATR GRSAEVHNLS ERRRRDRIDE KMRALQELIP
401: NCNKADKASM LDEAIEYLET LQLQLQIMSM GSGLYVPAMM LPPGMQHMHA PHMGPFSPIG VGMQMRLGMG MLDANVIESS RFIQVPQMQG TQLPITHTPG
501: SSVLHGMARP NAQVFGHHPS QVHPMPMPHA PIFSFPGEPF INPSSTLGLM ETVDKASSAF GLKDQIPQLV QNTNNGCNST NQMSTQCEAT IGGFEHSTLV
601: LNSGHATSAN DRGASNPSKE DKHL

Best Arabidopsis Sequence Match ( AT1G09530.3 )
(BLAST)

001: MPLFELFRLT KAKLESAQDR NPSPPVDEVV ELVWENGQIS TQSQSSRSRN IPPPQANSSR AREIGNGSKT TMVDEIPMSV PSLMTGLSQD DDFVPWLNHH
101: PSLDGYCSDF LRDVSSPVTV NEQESDMAVN QTAFPLFQRR KDGNESAPAA SSSQYNGFQS HSLYGSDRAR DLPSQQTNPD RFTQTQEPLI TSNKPSLVNF
201: SHFLRPATFA KTTNNNLHDT KEKSPQSPPN VFQTRVLGAK DSEDKVLNES VASATPKDNQ KACLISEDSC RKDQESEKAV VCSSVGSGNS LDGPSESPSL
301: SLKRKHSNIQ DIDCHSEDVE EESGDGRKEA GPSRTGLGSK RSRSAEVHNL SERRRRDRIN EKMRALQELI PNCNKVDKAS MLDEAIEYLK SLQLQVQIMS
401: MASGYYLPPA VMFPPGMGHY PAAAAAMAMG MGMPYAMGLP DLSRGGSSVN HGPQFQVSGM QQQPVAMGIP RVSGGGIFAG SSTIGNGSTR DLSGSKDQTT
501: TNNNSNLKPI KRKQGSSDQF CGSS

Arabidopsis Description

PIF3Transcription factor PIF3 [Source:UniProtKB/Swiss-Prot;Acc:O80536]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.