CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH39574
KRH74370
KRH74373

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G00050.1	KRH39574	AT1G32230.1	19548978
AT4G00050.1	KRH74370	AT1G32230.1	19548978
AT4G00050.1	KRH74373	AT1G32230.1	19548978

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG88937	Soybean	nucleus	93.01	91.61
VIT_15s0021g02690.t01	Wine grape	nucleus	62.66	61.72
KRH76132	Soybean	nucleus	24.24	60.66
AT4G00050.1	Thale cress	nucleus	51.09	58.65
CDX74328	Canola	nucleus	47.38	56.07
Bra000560.1-P	Field mustard	nucleus	47.38	55.93
CDX83214	Canola	nucleus	42.36	55.75
CDX91917	Canola	nucleus	41.92	55.33
Solyc01g090790.2.1	Tomato	nucleus	55.9	55.17
CDY21498	Canola	nucleus	46.51	55.04
PGSC0003DMT400066807	Potato	nucleus	55.68	54.96
CDY65390	Canola	nucleus	23.8	52.15
Bra037312.1-P	Field mustard	nucleus	23.8	52.15
KRH65412	Soybean	nucleus	43.45	50.13
KRH71636	Soybean	golgi, plasma membrane, vacuole	13.1	39.22
TraesCS1B01G226200.2	Wheat	nucleus	36.24	36.48
Os10t0556200-01	Rice	nucleus	36.9	36.34
HORVU1Hr1G054260.3	Barley	nucleus	36.03	35.56
TraesCS1D01G215600.2	Wheat	nucleus	35.15	35.38
TraesCS1A01G212700.1	Wheat	nucleus	34.93	35.16
KRH54630	Soybean	nucleus	30.35	34.58
Zm00001d029898_P001	Maize	nucleus	36.03	33.67
OQU92150	Sorghum	nucleus	37.77	32.22
KRH04711	Soybean	plastid	10.26	29.38
KRH72281	Soybean	nucleus, plastid	7.64	28.0
KRH05665	Soybean	nucleus	16.59	25.59
KRH15381	Soybean	nucleus	15.5	23.91
KRH28453	Soybean	nucleus	14.63	23.02
KRH19683	Soybean	nucleus	25.33	22.79
KRH04595	Soybean	nucleus	13.32	22.43
KRH32290	Soybean	nucleus	24.02	22.4
KRH69138	Soybean	cytosol, nucleus, vacuole	8.52	21.67
KRH67519	Soybean	nucleus	22.49	20.52
KRH55381	Soybean	cytosol	3.06	20.29
KRH77016	Soybean	nucleus	16.16	19.73
KRH33663	Soybean	nucleus	17.69	18.04
KRH45975	Soybean	nucleus	20.31	17.71
KRG99030	Soybean	nucleus	20.52	17.18
KRH73584	Soybean	nucleus	20.96	17.08
KRH71345	Soybean	nucleus	6.55	16.95
KRH14535	Soybean	nucleus	20.31	16.55
KRH03075	Soybean	nucleus	12.23	15.26
KRH33733	Soybean	nucleus	22.05	14.62
KRG90443	Soybean	nucleus	22.27	14.13
KRH68390	Soybean	nucleus	18.78	13.78
KRH32094	Soybean	nucleus	8.52	13.78
KRG96663	Soybean	nucleus	19.0	13.74
KRG95612	Soybean	nucleus	8.73	13.7
KRH34087	Soybean	nucleus	9.61	13.41
KRH67287	Soybean	nucleus	8.52	13.36
KRH68348	Soybean	nucleus	15.07	13.35
KRG92679	Soybean	nucleus	9.61	13.25
KRH12909	Soybean	nucleus	13.54	13.05
KRH37912	Soybean	nucleus	13.76	12.86
KRG96615	Soybean	nucleus	14.19	12.55
KRH71344	Soybean	cytosol	1.53	9.33
KRH05051	Soybean	nucleus	7.86	9.0

Protein Annotations

EntrezGene:100798775	MapMan:15.5.32	Gene3D:4.10.280.10	EMBL:ACUP02000290	ncoils:Coil	EnsemblPlantsGene:GLYMA_01G076900
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0046983	InterPro:HLH_DNA-bd_sf	UniProt:I1J6F8
InterPro:IPR011598	InterPro:IPR036638	EnsemblPlants:KRH75301	ProteinID:KRH75301	ProteinID:KRH75301.1	PFAM:PF00010
PFscan:PS50888	PANTHER:PTHR12565	PANTHER:PTHR12565:SF173	SMART:SM00353	SUPFAM:SSF47459	UniParc:UPI0002336FBA
InterPro:bHLH_dom	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr1:+:18297336..18303352

Molecular Weight (calculated)

49175.6 Da

IEP (calculated)

8.788

GRAVY (calculated)

-0.549

Length

458 amino acids

Sequence
(BLAST)

001: MSQCVPSWDV EDNPPPSRVS LRSNSNSTAP DVPMLDYEVA ELTWENGQLS MHGLGLPRVP VKPPTAVTNK YTWEKPRASG TLESIVNQVT SFPHRGKPTP
101: LNGGGGGGVY GNFRVPWFDP HATATTTNTV TMDALVPCSN REQSKQGMES VPGGTCMVGC STRVGSCCGG KGAKGHEATG RDQSVSGSAT FGRDSKHVTL
201: DTCDREFGVG FTSTSINSLE NTSSAKHCTK TTTVDDHDSV SHSKPVGEDQ DEGKKKRANG KSSVSTKRSR AAAIHNQSER KRRDKINQRM KTLQKLVPNS
301: SKSDKASMLD EVIEYLKQLQ AQLQMINRIN MSSMMLPLTM QQQLQMSMMS PMGMGLGMGM GMGMGMGMDM NSMNRAHIPG IPPVLHPSAF MPMAASWDAA
401: AAAGGGDRLQ GTPANVMPDP LSTFFGCQSQ PMTIDAYSRL AAMYQQLHQP PPASGSKN

Best Arabidopsis Sequence Match ( AT4G00050.1 )
(BLAST)

001: MSQCVPNCHI DDTPAAATTT VRSTTAADIP ILDYEVAELT WENGQLGLHG LGPPRVTASS TKYSTGAGGT LESIVDQATR LPNPKPTDEL VPWFHHRSSR
101: AAMAMDALVP CSNLVHEQQS KPGGVGSTRV GSCSDGRTMG GGKRARVAPE WSGGGSQRLT MDTYDVGFTS TSMGSHDNTI DDHDSVCHSR PQMEDEEEKK
201: AGGKSSVSTK RSRAAAIHNQ SERKRRDKIN QRMKTLQKLV PNSSKTDKAS MLDEVIEYLK QLQAQVSMMS RMNMPSMMLP MAMQQQQQLQ MSLMSNPMGL
301: GMGMGMPGLG LLDLNSMNRA AASAPNIHAN MMPNPFLPMN CPSWDASSND SRFQSPLIPD PMSAFLACST QPTTMEAYSR MATLYQQMQQ QLPPPSNPK

Arabidopsis Description

UNE10Transcription factor UNE10 [Source:UniProtKB/Swiss-Prot;Acc:Q8GZ38]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.