Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G00050.1 | CDY22597 | AT1G32230.1 | 19548978 |
| AT4G00050.1 | CDY41739 | AT1G32230.1 | 19548978 |
| AT4G00050.1 | CDY43007 | AT1G32230.1 | 19548978 |
| AT4G00050.1 | CDY60257 | AT1G32230.1 | 19548978 |
| AT4G00050.1 | CDY67026 | AT1G32230.1 | 19548978 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX91917 | Canola | nucleus | 93.39 | 93.66 |
| Bra000560.1-P | Field mustard | nucleus | 96.55 | 86.6 |
| CDX74328 | Canola | nucleus | 93.1 | 83.72 |
| CDY21498 | Canola | nucleus | 92.82 | 83.46 |
| CDY65390 | Canola | nucleus | 46.84 | 77.99 |
| AT4G00050.1 | Thale cress | nucleus | 78.45 | 68.42 |
| CDY37185 | Canola | mitochondrion | 13.22 | 46.94 |
| VIT_15s0021g02690.t01 | Wine grape | nucleus | 58.05 | 43.44 |
| KRH75301 | Soybean | nucleus | 55.75 | 42.36 |
| KRG88937 | Soybean | nucleus | 56.03 | 41.94 |
| PGSC0003DMT400066807 | Potato | nucleus | 53.74 | 40.3 |
| Solyc10g018510.1.1 | Tomato | nucleus | 39.08 | 34.78 |
| Os10t0556200-01 | Rice | nucleus | 42.24 | 31.61 |
| TraesCS1B01G226200.2 | Wheat | nucleus | 40.52 | 30.99 |
| HORVU1Hr1G054260.3 | Barley | nucleus | 41.09 | 30.82 |
| Zm00001d029898_P001 | Maize | nucleus | 43.1 | 30.61 |
| TraesCS1D01G215600.2 | Wheat | nucleus | 39.94 | 30.55 |
| TraesCS1A01G212700.1 | Wheat | nucleus | 39.66 | 30.33 |
| OQU92150 | Sorghum | nucleus | 44.83 | 29.05 |
| CDY24734 | Canola | plastid | 10.34 | 25.35 |
| CDY35224 | Canola | nucleus | 17.82 | 23.94 |
| CDY00603 | Canola | nucleus, plastid | 18.1 | 22.99 |
| CDY67566 | Canola | nucleus, plastid | 18.1 | 22.99 |
| CDY01438 | Canola | nucleus, plastid | 14.37 | 22.94 |
| CDY12804 | Canola | nucleus, plastid | 14.08 | 22.69 |
| CDY44048 | Canola | nucleus, plastid | 19.83 | 20.23 |
| CDX75629 | Canola | nucleus | 19.83 | 19.94 |
| CDY20289 | Canola | nucleus | 12.07 | 19.91 |
| CDY22448 | Canola | nucleus, plastid | 19.83 | 19.6 |
| CDX69281 | Canola | nucleus, plastid | 19.54 | 19.48 |
| CDY55014 | Canola | nucleus | 16.09 | 19.38 |
| CDY11836 | Canola | nucleus | 15.8 | 19.23 |
| CDY02785 | Canola | nucleus | 15.8 | 18.58 |
| CDY62262 | Canola | nucleus | 16.09 | 18.54 |
| CDY31989 | Canola | nucleus | 25.29 | 18.49 |
| CDY65446 | Canola | nucleus | 17.53 | 18.43 |
| CDX70453 | Canola | nucleus | 21.55 | 18.43 |
| CDY29961 | Canola | nucleus | 21.55 | 18.43 |
| CDY14866 | Canola | nucleus | 21.26 | 18.36 |
| CDX80064 | Canola | nucleus | 20.98 | 18.25 |
| CDX67873 | Canola | nucleus | 16.09 | 18.24 |
| CDY30375 | Canola | nucleus | 21.26 | 18.23 |
| CDY32733 | Canola | nucleus | 15.8 | 18.21 |
| CDY06865 | Canola | nucleus | 18.68 | 18.11 |
| CDX88653 | Canola | nucleus | 15.52 | 18.0 |
| CDY66254 | Canola | nucleus | 20.69 | 18.0 |
| CDY05725 | Canola | nucleus | 26.15 | 17.95 |
| CDY06870 | Canola | nucleus | 23.28 | 17.8 |
| CDX83349 | Canola | nucleus | 20.4 | 17.57 |
| CDX83509 | Canola | nucleus | 20.69 | 17.43 |
| CDY11401 | Canola | extracellular | 17.24 | 17.05 |
| CDX76616 | Canola | extracellular | 17.53 | 17.04 |
| CDY50911 | Canola | nucleus | 13.22 | 16.97 |
| CDY42809 | Canola | nucleus | 20.11 | 16.91 |
| CDY06026 | Canola | nucleus | 21.26 | 16.74 |
| CDX71916 | Canola | nucleus | 21.26 | 16.7 |
| CDX94963 | Canola | nucleus | 23.56 | 16.47 |
| CDY28232 | Canola | nucleus | 15.23 | 16.21 |
| CDX68710 | Canola | nucleus | 15.23 | 16.21 |
| CDY06358 | Canola | nucleus | 22.41 | 15.89 |
| CDY22636 | Canola | nucleus | 22.41 | 15.89 |
| CDY64745 | Canola | nucleus | 22.7 | 15.74 |
| CDY34780 | Canola | nucleus | 14.94 | 15.38 |
| CDY06867 | Canola | nucleus | 21.26 | 15.35 |
| CDX76819 | Canola | nucleus | 14.94 | 15.29 |
| CDY35220 | Canola | nucleus | 15.52 | 14.56 |
| CDX91293 | Canola | nucleus | 12.36 | 14.43 |
| CDY21898 | Canola | nucleus | 12.36 | 14.29 |
| CDY22062 | Canola | nucleus | 12.36 | 14.14 |
| CDY18011 | Canola | nucleus | 12.36 | 14.14 |
| CDX89919 | Canola | nucleus | 12.36 | 13.83 |
| CDY20290 | Canola | endoplasmic reticulum, extracellular | 8.05 | 13.79 |
| CDY18143 | Canola | nucleus | 12.07 | 13.73 |
| CDX97278 | Canola | nucleus | 11.78 | 13.71 |
| CDY46133 | Canola | nucleus | 7.47 | 13.61 |
| CDX90930 | Canola | nucleus | 12.07 | 13.55 |
| CDY35222 | Canola | nucleus | 21.26 | 12.82 |
| CDY46132 | Canola | endoplasmic reticulum | 5.75 | 11.36 |
Protein Annotations
| MapMan:15.5.32 | Gene3D:4.10.280.10 | GO:A0A078D4I6 | EnsemblPlants:CDX83214 | ProteinID:CDX83214 | ProteinID:CDX83214.1 |
| ncoils:Coil | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0046983 | EnsemblPlantsGene:GSBRNA2T00138761001 |
| InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | PFAM:PF00010 | PFscan:PS50888 | PANTHER:PTHR12565 |
| PANTHER:PTHR12565:SF173 | SMART:SM00353 | SUPFAM:SSF47459 | UniParc:UPI0004EF39FE | InterPro:bHLH_dom | SEG:seg |
Description
BnaA03g22920D
Coordinates
chrLK031832:-:453005..455464
Molecular Weight (calculated)
38052.3 Da
IEP (calculated)
7.994
GRAVY (calculated)
-0.591
Length
348 amino acids
Sequence
(BLAST)
(BLAST)
001: MSQRVPNYHI DDTPAPATVR STNAADIPML DYGVAELTWE NGQLGLHGLC PPRWTKLLAS LTLSPPMSSQ PATGVGSCSD GHPMNGGKRS RVAPEWSASG
101: SQRLTIDTYG FTSTSLDDNS SSGGKPFTKT TNIDDHDSVE EEEEEKHTGG KSSASTKRSR AAAIHNQSER KRRDKINQRM KTLQKLVPNS SKTDKASMLD
201: EVIEYLKQLQ AQVCMMSRMN MPSMMLPMAM QQQQQQLQLN LMSSSMGLGL RMGMPGLGLV DLSSMNRAAT ATAPNIHANM MQNPFVPMTS TSWDASSSTD
301: PRFQSPLIPD PMSAFLACSS QPTTMEAYSR MAALYQQMQQ QLPPSNPK
101: SQRLTIDTYG FTSTSLDDNS SSGGKPFTKT TNIDDHDSVE EEEEEKHTGG KSSASTKRSR AAAIHNQSER KRRDKINQRM KTLQKLVPNS SKTDKASMLD
201: EVIEYLKQLQ AQVCMMSRMN MPSMMLPMAM QQQQQQLQLN LMSSSMGLGL RMGMPGLGLV DLSSMNRAAT ATAPNIHANM MQNPFVPMTS TSWDASSSTD
301: PRFQSPLIPD PMSAFLACSS QPTTMEAYSR MAALYQQMQQ QLPPSNPK
001: MSQCVPNCHI DDTPAAATTT VRSTTAADIP ILDYEVAELT WENGQLGLHG LGPPRVTASS TKYSTGAGGT LESIVDQATR LPNPKPTDEL VPWFHHRSSR
101: AAMAMDALVP CSNLVHEQQS KPGGVGSTRV GSCSDGRTMG GGKRARVAPE WSGGGSQRLT MDTYDVGFTS TSMGSHDNTI DDHDSVCHSR PQMEDEEEKK
201: AGGKSSVSTK RSRAAAIHNQ SERKRRDKIN QRMKTLQKLV PNSSKTDKAS MLDEVIEYLK QLQAQVSMMS RMNMPSMMLP MAMQQQQQLQ MSLMSNPMGL
301: GMGMGMPGLG LLDLNSMNRA AASAPNIHAN MMPNPFLPMN CPSWDASSND SRFQSPLIPD PMSAFLACST QPTTMEAYSR MATLYQQMQQ QLPPPSNPK
101: AAMAMDALVP CSNLVHEQQS KPGGVGSTRV GSCSDGRTMG GGKRARVAPE WSGGGSQRLT MDTYDVGFTS TSMGSHDNTI DDHDSVCHSR PQMEDEEEKK
201: AGGKSSVSTK RSRAAAIHNQ SERKRRDKIN QRMKTLQKLV PNSSKTDKAS MLDEVIEYLK QLQAQVSMMS RMNMPSMMLP MAMQQQQQLQ MSLMSNPMGL
301: GMGMGMPGLG LLDLNSMNRA AASAPNIHAN MMPNPFLPMN CPSWDASSND SRFQSPLIPD PMSAFLACST QPTTMEAYSR MATLYQQMQQ QLPPPSNPK
Arabidopsis Description
UNE10Transcription factor UNE10 [Source:UniProtKB/Swiss-Prot;Acc:Q8GZ38]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.