Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc08g005270.2.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G00050.1 | Solyc08g005270.2.1 | AT1G32230.1 | 19548978 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra037312.1-P | Field mustard | nucleus | 23.02 | 43.06 |
| CDY65390 | Canola | nucleus | 23.02 | 43.06 |
| AT4G00050.1 | Thale cress | nucleus | 42.71 | 41.85 |
| CDX74328 | Canola | nucleus | 40.66 | 41.09 |
| CDY21498 | Canola | nucleus | 40.15 | 40.57 |
| Bra000560.1-P | Field mustard | nucleus | 40.15 | 40.46 |
| Solyc01g090790.2.1 | Tomato | nucleus | 46.55 | 39.22 |
| CDX83214 | Canola | nucleus | 34.78 | 39.08 |
| CDX91917 | Canola | nucleus | 34.53 | 38.9 |
| Solyc03g115540.1.1 | Tomato | nucleus | 29.67 | 26.42 |
| Zm00001d029898_P001 | Maize | nucleus | 32.23 | 25.71 |
| TraesCS1D01G215600.2 | Wheat | nucleus | 29.41 | 25.27 |
| TraesCS1B01G226200.2 | Wheat | nucleus | 29.41 | 25.27 |
| TraesCS1A01G212700.1 | Wheat | nucleus | 29.41 | 25.27 |
| HORVU1Hr1G054260.3 | Barley | nucleus | 29.92 | 25.22 |
| Os10t0556200-01 | Rice | nucleus | 29.92 | 25.16 |
| OQU92150 | Sorghum | nucleus | 32.74 | 23.84 |
| Solyc06g069600.1.1 | Tomato | nucleus | 24.55 | 23.19 |
| Solyc04g078690.2.1 | Tomato | nucleus | 14.83 | 18.47 |
| Solyc04g007430.1.1 | Tomato | nucleus | 8.44 | 17.93 |
| Solyc02g093280.2.1 | Tomato | nucleus | 15.35 | 15.87 |
| Solyc03g005350.2.1 | Tomato | nucleus | 11.25 | 14.86 |
| Solyc09g063010.2.1 | Tomato | nucleus | 20.72 | 14.54 |
| Solyc09g083220.2.1 | Tomato | nucleus | 11.25 | 14.47 |
| Solyc07g043580.2.1 | Tomato | nucleus | 17.65 | 13.94 |
| Solyc06g008030.2.1 | Tomato | nucleus | 18.16 | 13.87 |
| Solyc09g065820.2.1 | Tomato | nucleus | 9.97 | 12.91 |
| Solyc12g010170.1.1 | Tomato | nucleus | 11.25 | 11.37 |
| Solyc07g005400.2.1 | Tomato | nucleus | 12.79 | 11.36 |
| Solyc01g102300.2.1 | Tomato | nucleus | 20.72 | 11.33 |
Protein Annotations
| MapMan:15.5.32 | Gene3D:4.10.280.10 | ncoils:Coil | GO:GO:0000003 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0008150 | GO:GO:0009506 | GO:GO:0009567 | GO:GO:0046983 |
| InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | UniProt:K4CYX5 | PFAM:PF00010 | PFscan:PS50888 |
| PANTHER:PTHR12565 | PANTHER:PTHR12565:SF173 | SMART:SM00353 | SUPFAM:SSF47459 | EnsemblPlantsGene:Solyc10g018510.1 | EnsemblPlants:Solyc10g018510.1.1 |
| UniParc:UPI000276C796 | InterPro:bHLH_dom | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chr10:-:8509882..8514762
Molecular Weight (calculated)
43369.2 Da
IEP (calculated)
5.457
GRAVY (calculated)
-0.638
Length
391 amino acids
Sequence
(BLAST)
(BLAST)
001: MDYEVAELKW EKGEVVMHGL GPPGVPCYYK PLSTPSPTKY TWDDKPHAAA GGTLESIVNQ ATTHNIDIGD EGGDDDDLVS WFDDCLPETS MDIVAVVPTS
101: CTNYNQQVPP STRVASCSGD AEMARVGMGS SFEEISEDFE NQEAKNLIGS MVYEGKNNTV SPGETSLGEE RVLTTTSTFK HNKRKTLNNH DSRGQESRDN
201: EDEDEKKRSK ISSFSTKRCR VAATHNQSER KRRDKINQRL KTLQKLVPTS SKTDTASMLD EVIEYLKQLR AQVKAMSMMI HVNMQPPPMM LPNMAFQQQQ
301: QQFQMSMMGM ARPIDVNALS SPNITTIPSI LHTTAPSNFN NPPIASPGAD PLASLVAVRQ LSQPMTMDAY SRMAALYQQY LQSNANLGFK N
101: CTNYNQQVPP STRVASCSGD AEMARVGMGS SFEEISEDFE NQEAKNLIGS MVYEGKNNTV SPGETSLGEE RVLTTTSTFK HNKRKTLNNH DSRGQESRDN
201: EDEDEKKRSK ISSFSTKRCR VAATHNQSER KRRDKINQRL KTLQKLVPTS SKTDTASMLD EVIEYLKQLR AQVKAMSMMI HVNMQPPPMM LPNMAFQQQQ
301: QQFQMSMMGM ARPIDVNALS SPNITTIPSI LHTTAPSNFN NPPIASPGAD PLASLVAVRQ LSQPMTMDAY SRMAALYQQY LQSNANLGFK N
001: MSQCVPNCHI DDTPAAATTT VRSTTAADIP ILDYEVAELT WENGQLGLHG LGPPRVTASS TKYSTGAGGT LESIVDQATR LPNPKPTDEL VPWFHHRSSR
101: AAMAMDALVP CSNLVHEQQS KPGGVGSTRV GSCSDGRTMG GGKRARVAPE WSGGGSQRLT MDTYDVGFTS TSMGSHDNTI DDHDSVCHSR PQMEDEEEKK
201: AGGKSSVSTK RSRAAAIHNQ SERKRRDKIN QRMKTLQKLV PNSSKTDKAS MLDEVIEYLK QLQAQVSMMS RMNMPSMMLP MAMQQQQQLQ MSLMSNPMGL
301: GMGMGMPGLG LLDLNSMNRA AASAPNIHAN MMPNPFLPMN CPSWDASSND SRFQSPLIPD PMSAFLACST QPTTMEAYSR MATLYQQMQQ QLPPPSNPK
101: AAMAMDALVP CSNLVHEQQS KPGGVGSTRV GSCSDGRTMG GGKRARVAPE WSGGGSQRLT MDTYDVGFTS TSMGSHDNTI DDHDSVCHSR PQMEDEEEKK
201: AGGKSSVSTK RSRAAAIHNQ SERKRRDKIN QRMKTLQKLV PNSSKTDKAS MLDEVIEYLK QLQAQVSMMS RMNMPSMMLP MAMQQQQQLQ MSLMSNPMGL
301: GMGMGMPGLG LLDLNSMNRA AASAPNIHAN MMPNPFLPMN CPSWDASSND SRFQSPLIPD PMSAFLACST QPTTMEAYSR MATLYQQMQQ QLPPPSNPK
Arabidopsis Description
UNE10Transcription factor UNE10 [Source:UniProtKB/Swiss-Prot;Acc:Q8GZ38]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.