Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G00050.1 | CDY22597 | AT1G32230.1 | 19548978 |
| AT4G00050.1 | CDY41739 | AT1G32230.1 | 19548978 |
| AT4G00050.1 | CDY43007 | AT1G32230.1 | 19548978 |
| AT4G00050.1 | CDY60257 | AT1G32230.1 | 19548978 |
| AT4G00050.1 | CDY67026 | AT1G32230.1 | 19548978 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX83214 | Canola | nucleus | 93.66 | 93.39 |
| CDX74328 | Canola | nucleus | 93.95 | 84.24 |
| Bra000560.1-P | Field mustard | nucleus | 92.51 | 82.73 |
| CDY21498 | Canola | nucleus | 92.22 | 82.69 |
| CDY65390 | Canola | nucleus | 45.82 | 76.08 |
| AT4G00050.1 | Thale cress | nucleus | 78.67 | 68.42 |
| CDY37185 | Canola | mitochondrion | 13.26 | 46.94 |
| VIT_15s0021g02690.t01 | Wine grape | nucleus | 57.35 | 42.8 |
| KRH75301 | Soybean | nucleus | 55.33 | 41.92 |
| KRG88937 | Soybean | nucleus | 55.62 | 41.51 |
| PGSC0003DMT400066807 | Potato | nucleus | 53.6 | 40.09 |
| Solyc10g018510.1.1 | Tomato | nucleus | 38.9 | 34.53 |
| Os10t0556200-01 | Rice | nucleus | 42.36 | 31.61 |
| TraesCS1B01G226200.2 | Wheat | nucleus | 40.06 | 30.55 |
| HORVU1Hr1G054260.3 | Barley | nucleus | 40.63 | 30.39 |
| TraesCS1D01G215600.2 | Wheat | nucleus | 39.48 | 30.11 |
| Zm00001d029898_P001 | Maize | nucleus | 42.36 | 30.0 |
| TraesCS1A01G212700.1 | Wheat | nucleus | 39.19 | 29.89 |
| OQU92150 | Sorghum | nucleus | 44.67 | 28.86 |
| CDY24734 | Canola | plastid | 10.66 | 26.06 |
| CDY35224 | Canola | nucleus | 17.87 | 23.94 |
| CDY01438 | Canola | nucleus, plastid | 14.7 | 23.39 |
| CDY12804 | Canola | nucleus, plastid | 14.41 | 23.15 |
| CDY00603 | Canola | nucleus, plastid | 18.16 | 22.99 |
| CDY67566 | Canola | nucleus, plastid | 18.16 | 22.99 |
| CDY44048 | Canola | nucleus, plastid | 19.6 | 19.94 |
| CDY20289 | Canola | nucleus | 12.1 | 19.91 |
| CDX75629 | Canola | nucleus | 19.6 | 19.65 |
| CDY11836 | Canola | nucleus | 16.14 | 19.58 |
| CDY22448 | Canola | nucleus, plastid | 19.6 | 19.32 |
| CDX69281 | Canola | nucleus, plastid | 19.31 | 19.2 |
| CDY31989 | Canola | nucleus | 26.22 | 19.12 |
| CDY65446 | Canola | nucleus | 18.16 | 19.03 |
| CDY55014 | Canola | nucleus | 15.85 | 19.03 |
| CDY29961 | Canola | nucleus | 21.9 | 18.67 |
| CDX70453 | Canola | nucleus | 21.9 | 18.67 |
| CDY14866 | Canola | nucleus | 21.61 | 18.61 |
| CDX67873 | Canola | nucleus | 16.43 | 18.57 |
| CDY05725 | Canola | nucleus | 27.09 | 18.54 |
| CDY30375 | Canola | nucleus | 21.61 | 18.47 |
| CDY06865 | Canola | nucleus | 19.02 | 18.38 |
| CDX88653 | Canola | nucleus | 15.85 | 18.33 |
| CDX80064 | Canola | nucleus | 21.04 | 18.25 |
| CDY02785 | Canola | nucleus | 15.56 | 18.24 |
| CDY62262 | Canola | nucleus | 15.85 | 18.21 |
| CDY06870 | Canola | nucleus | 23.63 | 18.02 |
| CDY66254 | Canola | nucleus | 20.75 | 18.0 |
| CDY32733 | Canola | nucleus | 15.56 | 17.88 |
| CDX83509 | Canola | nucleus | 21.04 | 17.68 |
| CDY11401 | Canola | extracellular | 17.87 | 17.61 |
| CDX76616 | Canola | extracellular | 18.16 | 17.6 |
| CDX83349 | Canola | nucleus | 20.46 | 17.57 |
| CDY50911 | Canola | nucleus | 13.54 | 17.34 |
| CDY42809 | Canola | nucleus | 20.46 | 17.15 |
| CDY06026 | Canola | nucleus | 21.61 | 16.97 |
| CDX71916 | Canola | nucleus | 21.61 | 16.93 |
| CDX94963 | Canola | nucleus | 23.92 | 16.67 |
| CDY64745 | Canola | nucleus | 23.05 | 15.94 |
| CDY28232 | Canola | nucleus | 14.99 | 15.9 |
| CDX68710 | Canola | nucleus | 14.99 | 15.9 |
| CDY22636 | Canola | nucleus | 22.48 | 15.89 |
| CDY06358 | Canola | nucleus | 22.48 | 15.89 |
| CDY06867 | Canola | nucleus | 21.61 | 15.56 |
| CDY34780 | Canola | nucleus | 14.99 | 15.38 |
| CDX76819 | Canola | nucleus | 14.99 | 15.29 |
| CDY35220 | Canola | nucleus | 16.14 | 15.09 |
| CDY21898 | Canola | nucleus | 12.97 | 14.95 |
| CDY22062 | Canola | nucleus | 12.97 | 14.8 |
| CDX91293 | Canola | nucleus | 12.68 | 14.77 |
| CDY18011 | Canola | nucleus | 12.68 | 14.47 |
| CDX89919 | Canola | nucleus | 12.97 | 14.47 |
| CDY18143 | Canola | nucleus | 12.68 | 14.38 |
| CDX97278 | Canola | nucleus | 12.1 | 14.05 |
| CDX90930 | Canola | nucleus | 12.39 | 13.87 |
| CDY46133 | Canola | nucleus | 7.49 | 13.61 |
| CDY20290 | Canola | endoplasmic reticulum, extracellular | 7.78 | 13.3 |
| CDY35222 | Canola | nucleus | 21.61 | 13.0 |
| CDY46132 | Canola | endoplasmic reticulum | 5.48 | 10.8 |
Protein Annotations
| MapMan:15.5.32 | Gene3D:4.10.280.10 | GO:A0A078DSQ0 | EnsemblPlants:CDX91917 | ProteinID:CDX91917 | ProteinID:CDX91917.1 |
| ncoils:Coil | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0046983 | EnsemblPlantsGene:GSBRNA2T00153547001 |
| InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | PFAM:PF00010 | PFscan:PS50888 | PANTHER:PTHR12565 |
| PANTHER:PTHR12565:SF173 | SMART:SM00353 | SUPFAM:SSF47459 | UniParc:UPI0004EEEBB8 | InterPro:bHLH_dom | SEG:seg |
Description
BnaC03g32190D
Coordinates
chrLK031870:-:816121..818562
Molecular Weight (calculated)
38123.3 Da
IEP (calculated)
7.611
GRAVY (calculated)
-0.607
Length
347 amino acids
Sequence
(BLAST)
(BLAST)
001: MSQCVPNYHI DDTPAATVRS TKAADIPTLD YEVAELTWHN GQLGLHGLCP PRWTKLLASL TLSPPMSSQP ATGVGSCSDG HPMDGGKRAR VAPEWSASRS
101: QRLTIDTYGF TSTSLDDNSS SGGKPFPKTT NIDDHDSVEE EEEEKQTGGK SSASTKRSRA AAIHNQSERK RRDKINQRMK TLQKLVPNSS KTDKASMLDE
201: VIEYLKQLQA QVYMMSRMNM PSMMLPMAMQ QQQQQLQLNL MSSSMGLGLR MGMPGLGLVD LSSMNRAATA TAPNIHANMM QNPFVPMTST SWDASSSTDP
301: RFQSPLIPDP MSAFLACSSQ PTTMEAYSRM AALYHQMQQQ LPPSNQN
101: QRLTIDTYGF TSTSLDDNSS SGGKPFPKTT NIDDHDSVEE EEEEKQTGGK SSASTKRSRA AAIHNQSERK RRDKINQRMK TLQKLVPNSS KTDKASMLDE
201: VIEYLKQLQA QVYMMSRMNM PSMMLPMAMQ QQQQQLQLNL MSSSMGLGLR MGMPGLGLVD LSSMNRAATA TAPNIHANMM QNPFVPMTST SWDASSSTDP
301: RFQSPLIPDP MSAFLACSSQ PTTMEAYSRM AALYHQMQQQ LPPSNQN
001: MSQCVPNCHI DDTPAAATTT VRSTTAADIP ILDYEVAELT WENGQLGLHG LGPPRVTASS TKYSTGAGGT LESIVDQATR LPNPKPTDEL VPWFHHRSSR
101: AAMAMDALVP CSNLVHEQQS KPGGVGSTRV GSCSDGRTMG GGKRARVAPE WSGGGSQRLT MDTYDVGFTS TSMGSHDNTI DDHDSVCHSR PQMEDEEEKK
201: AGGKSSVSTK RSRAAAIHNQ SERKRRDKIN QRMKTLQKLV PNSSKTDKAS MLDEVIEYLK QLQAQVSMMS RMNMPSMMLP MAMQQQQQLQ MSLMSNPMGL
301: GMGMGMPGLG LLDLNSMNRA AASAPNIHAN MMPNPFLPMN CPSWDASSND SRFQSPLIPD PMSAFLACST QPTTMEAYSR MATLYQQMQQ QLPPPSNPK
101: AAMAMDALVP CSNLVHEQQS KPGGVGSTRV GSCSDGRTMG GGKRARVAPE WSGGGSQRLT MDTYDVGFTS TSMGSHDNTI DDHDSVCHSR PQMEDEEEKK
201: AGGKSSVSTK RSRAAAIHNQ SERKRRDKIN QRMKTLQKLV PNSSKTDKAS MLDEVIEYLK QLQAQVSMMS RMNMPSMMLP MAMQQQQQLQ MSLMSNPMGL
301: GMGMGMPGLG LLDLNSMNRA AASAPNIHAN MMPNPFLPMN CPSWDASSND SRFQSPLIPD PMSAFLACST QPTTMEAYSR MATLYQQMQQ QLPPPSNPK
Arabidopsis Description
UNE10Transcription factor UNE10 [Source:UniProtKB/Swiss-Prot;Acc:Q8GZ38]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.