Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra018539.1-P | Field mustard | nucleus | 82.94 | 97.64 |
| CDX91293 | Canola | nucleus | 95.65 | 95.97 |
| CDY21898 | Canola | nucleus | 86.62 | 86.05 |
| CDY22062 | Canola | nucleus | 86.96 | 85.53 |
| AT4G02590.1 | Thale cress | nucleus | 88.63 | 85.48 |
| CDY18011 | Canola | nucleus | 85.95 | 84.54 |
| CDX90930 | Canola | nucleus | 86.62 | 83.55 |
| CDY18143 | Canola | nucleus | 78.6 | 76.8 |
| CDX89919 | Canola | nucleus | 78.93 | 75.88 |
| KRG95612 | Soybean | nucleus | 68.56 | 70.21 |
| Os07t0182200-01 | Rice | cytosol | 31.77 | 69.85 |
| KRH32094 | Soybean | nucleus | 65.55 | 69.26 |
| VIT_07s0141g00220.t01 | Wine grape | nucleus | 66.89 | 69.2 |
| KRH67287 | Soybean | nucleus | 67.22 | 68.84 |
| Solyc09g065820.2.1 | Tomato | nucleus | 68.23 | 67.55 |
| PGSC0003DMT400049768 | Potato | nucleus | 67.89 | 67.22 |
| KRH55381 | Soybean | cytosol | 15.38 | 66.67 |
| KXG37359 | Sorghum | nucleus | 51.84 | 54.58 |
| Zm00001d013073_P002 | Maize | nucleus | 51.84 | 54.39 |
| GSMUA_Achr4P21070_001 | Banana | nucleus | 54.18 | 54.0 |
| OQU88567 | Sorghum | nucleus | 49.83 | 53.79 |
| TraesCS5D01G449200.1 | Wheat | nucleus | 50.5 | 53.74 |
| TraesCS5B01G445900.1 | Wheat | nucleus | 50.5 | 53.74 |
| Os03t0797600-01 | Rice | nucleus | 52.51 | 53.4 |
| GSMUA_Achr5P03100_001 | Banana | nucleus | 48.83 | 53.28 |
| Zm00001d018967_P001 | Maize | nucleus | 49.83 | 52.28 |
| TraesCS5A01G441900.1 | Wheat | nucleus | 47.49 | 50.53 |
| HORVU5Hr1G106310.3 | Barley | nucleus | 49.16 | 47.12 |
| GSMUA_Achr9P25560_001 | Banana | nucleus | 53.51 | 45.33 |
| CDY55014 | Canola | nucleus | 34.78 | 35.99 |
| CDY02785 | Canola | nucleus | 35.12 | 35.47 |
| CDY32733 | Canola | nucleus | 35.12 | 34.77 |
| CDY11836 | Canola | nucleus | 33.11 | 34.62 |
| CDY62262 | Canola | nucleus | 34.11 | 33.77 |
| CDX88653 | Canola | nucleus | 33.44 | 33.33 |
| CDY46132 | Canola | endoplasmic reticulum | 19.06 | 32.39 |
| CDY20290 | Canola | endoplasmic reticulum, extracellular | 21.4 | 31.53 |
| CDX68710 | Canola | nucleus | 34.45 | 31.5 |
| CDY28232 | Canola | nucleus | 34.11 | 31.19 |
| CDY34780 | Canola | nucleus | 35.12 | 31.07 |
| CDX76819 | Canola | nucleus | 35.12 | 30.88 |
| CDY20289 | Canola | nucleus | 21.4 | 30.33 |
| CDY37185 | Canola | mitochondrion | 9.36 | 28.57 |
| CDY46133 | Canola | nucleus | 16.05 | 25.13 |
| CDY24734 | Canola | plastid | 9.7 | 20.42 |
| CDY01438 | Canola | nucleus, plastid | 13.04 | 17.89 |
| CDY12804 | Canola | nucleus, plastid | 12.71 | 17.59 |
| CDY35224 | Canola | nucleus | 13.04 | 15.06 |
| CDY65390 | Canola | nucleus | 10.37 | 14.83 |
| CDY00603 | Canola | nucleus, plastid | 13.38 | 14.6 |
| CDY67566 | Canola | nucleus, plastid | 13.38 | 14.6 |
| CDY44048 | Canola | nucleus, plastid | 14.72 | 12.9 |
| CDY22448 | Canola | nucleus, plastid | 14.72 | 12.5 |
| CDX75629 | Canola | nucleus | 14.38 | 12.43 |
| CDX69281 | Canola | nucleus, plastid | 14.38 | 12.32 |
| CDX91917 | Canola | nucleus | 14.05 | 12.1 |
| CDX83214 | Canola | nucleus | 13.71 | 11.78 |
| CDX80064 | Canola | nucleus | 15.72 | 11.75 |
| CDY14866 | Canola | nucleus | 15.72 | 11.66 |
| CDY30375 | Canola | nucleus | 15.72 | 11.58 |
| CDX70453 | Canola | nucleus | 15.72 | 11.55 |
| CDY29961 | Canola | nucleus | 15.72 | 11.55 |
| CDY66254 | Canola | nucleus | 15.05 | 11.25 |
| CDX83509 | Canola | nucleus | 15.38 | 11.14 |
| CDY31989 | Canola | nucleus | 17.73 | 11.13 |
| CDX74328 | Canola | nucleus | 14.38 | 11.11 |
| CDY35220 | Canola | nucleus | 13.71 | 11.05 |
| CDY06865 | Canola | nucleus | 13.04 | 10.86 |
| CDX67873 | Canola | nucleus | 11.04 | 10.75 |
| CDY06026 | Canola | nucleus | 15.72 | 10.63 |
| CDX71916 | Canola | nucleus | 15.72 | 10.61 |
| CDY65446 | Canola | nucleus | 11.71 | 10.57 |
| CDY05725 | Canola | nucleus | 17.73 | 10.45 |
| CDY42809 | Canola | nucleus | 14.38 | 10.39 |
| CDY21498 | Canola | nucleus | 13.38 | 10.34 |
| CDY11401 | Canola | extracellular | 12.04 | 10.23 |
| CDX83349 | Canola | nucleus | 13.71 | 10.15 |
| CDY06870 | Canola | nucleus | 15.38 | 10.11 |
| CDY50911 | Canola | nucleus | 9.03 | 9.96 |
| CDY06867 | Canola | nucleus | 16.05 | 9.96 |
| CDX76616 | Canola | extracellular | 11.71 | 9.78 |
| CDX94963 | Canola | nucleus | 15.05 | 9.04 |
| CDY22636 | Canola | nucleus | 14.72 | 8.96 |
| CDY64745 | Canola | nucleus | 14.72 | 8.76 |
| CDY06358 | Canola | nucleus | 14.38 | 8.76 |
| CDY35222 | Canola | nucleus | 15.05 | 7.8 |
Protein Annotations
| EnsemblPlants:CDX97278 | EnsemblPlantsGene:GSBRNA2T00104317001 | Gene3D:4.10.280.10 | GO:A0A078ED38 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | InterPro:bHLH_dom |
| PANTHER:PTHR16223 | PANTHER:PTHR16223:SF15 | PFAM:PF00010 | PFscan:PS50888 | ProteinID:CDX97278 | ProteinID:CDX97278.1 |
| SEG:seg | SMART:SM00353 | SUPFAM:SSF47459 | UniParc:UPI0004EEBF38 | MapMan:15.5.32 | : |
Description
BnaA02g20690D
Coordinates
chrLK031898:-:507203..509311
Molecular Weight (calculated)
31835.1 Da
IEP (calculated)
5.965
GRAVY (calculated)
-0.404
Length
299 amino acids
Sequence
(BLAST)
(BLAST)
001: MAHENLSDQT PSDDFFDQIL GLPNFPASSA AGLSGGLGGG GGAPPMMLQL GSGEEGSGFH SQMFPLGLSL EQGKGPGVLR PEGGGGLGSG KRFSDDVLDH
101: PSSSMKPVFP GQPMQQPAPS APPHQPTSIR PRVRARRGQA TDPHSIAERL RRERIAEWIR ALQELVPTVN KTDRAAMIDE IVDYVKFLML QVKVWSMSRL
201: GGAGAVAPLV TDMPLPSSVE DEGSEGGRTP QAAWEKGSND GTERQVAKLM EKNVWAAMQL LQSKTLCMMP ISLAMAIYHS QPPDTSSSVV KPETNPPPP
101: PSSSMKPVFP GQPMQQPAPS APPHQPTSIR PRVRARRGQA TDPHSIAERL RRERIAEWIR ALQELVPTVN KTDRAAMIDE IVDYVKFLML QVKVWSMSRL
201: GGAGAVAPLV TDMPLPSSVE DEGSEGGRTP QAAWEKGSND GTERQVAKLM EKNVWAAMQL LQSKTLCMMP ISLAMAIYHS QPPDTSSSVV KPETNPPPP
001: MANNNNIPHD SISDPSPTDD FFEQILGLSN FSGSSGSGLS GIGGVGPPPM MLQLGSGNEG NHNHMGAIGG GGPVGFHNQM FPLGLSLDQG KGHGFLKPDE
101: TGKRFQDDVL DNRCSSMKPI FHGQPMSQPA PPMPHQQSTI RPRVRARRGQ ATDPHSIAER LRRERIAERI RSLQELVPTV NKTDRAAMID EIVDYVKFLR
201: LQVKVLSMSR LGGAGAVAPL VTEMPLSSSV EDETQAVWEK WSNDGTERQV AKLMEENVGA AMQLLQSKAL CIMPISLAMA IYHSQPPDTS SSIVKPEMNP
301: PP
101: TGKRFQDDVL DNRCSSMKPI FHGQPMSQPA PPMPHQQSTI RPRVRARRGQ ATDPHSIAER LRRERIAERI RSLQELVPTV NKTDRAAMID EIVDYVKFLR
201: LQVKVLSMSR LGGAGAVAPL VTEMPLSSSV EDETQAVWEK WSNDGTERQV AKLMEENVGA AMQLLQSKAL CIMPISLAMA IYHSQPPDTS SSIVKPEMNP
301: PP
Arabidopsis Description
basic helix-loop-helix (bHLH) DNA-binding superfamily protein [Source:TAIR;Acc:AT1G03040]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.