CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX68583
CDX74329
CDX74700
CDX83121
CDX83470
CDX90351
CDX91916
CDY01438
CDY12804
CDY17765
CDY18962
CDY24734
CDY27400
CDY30593
CDY34252
CDY37020
CDY37185
CDY38318
CDY41998
CDY42646
CDY44246
CDY46317
CDY63447

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G42870.1	CDX83470	AT2G43650.1	21798944
AT2G42870.1	CDY44246	AT2G43650.1	21798944
AT2G42870.1	CDX74700	AT2G44950.1	21798944
AT2G42870.1	CDY18962	AT2G44950.1	21798944
AT2G42870.1	CDY27400	AT2G44950.1	21798944
AT2G42870.1	CDY37020	AT2G44950.1	21798944
AT2G42870.1	CDY34252	AT3G22440.1	21798944
AT2G42870.1	CDY38318	AT3G22440.1	21798944
AT2G42870.1	CDY46317	AT3G22440.1	21798944
AT2G42870.1	CDX68583	AT3G50330.1	21798944
AT2G42870.1	CDX83121	AT3G50330.1	21798944
AT2G42870.1	CDY17765	AT3G50330.1	21798944
AT2G42870.1	CDY30593	AT3G50330.1	21798944
AT2G42870.1	CDX74329	AT4G00120.1	21798944
AT2G42870.1	CDX91916	AT4G00120.1	21798944
AT2G42870.1	CDX90351	AT4G39690.1	21798944
AT2G42870.1	CDY41998	AT4G39690.1	21798944
AT2G42870.1	CDY42646	AT4G39690.1	21798944
AT2G42870.1	CDY63447	AT4G39690.1	21798944
AT2G42870.1	CDY01438	AT5G67110.1	21798944
AT2G42870.1	CDY12804	AT5G67110.1	21798944
AT2G42870.1	CDY24734	AT5G67110.1	21798944
AT2G42870.1	CDY37185	AT5G67110.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra000276.1-P	Field mustard	plastid	100.0	100.0
CDY42818	Canola	plastid	96.55	95.73
CDY14860	Canola	plastid	91.38	91.38
CDY68147	Canola	plastid	88.79	88.79
CDY50830	Canola	plastid	87.07	87.07
AT2G42870.1	Thale cress	plastid	79.31	77.97
CDX89007	Canola	plastid	66.38	66.38
CDY00592	Canola	plastid	66.38	66.38
CDX71918	Canola	plastid	57.76	62.04
CDY49257	Canola	plastid	61.21	61.21
Solyc07g056360.1.1	Tomato	nucleus	43.97	49.04
PGSC0003DMT400044708	Potato	cytosol	42.24	44.95
KRH73670	Soybean	plastid	40.52	36.43
KRH14475	Soybean	nucleus	42.24	35.25
VIT_12s0142g00160.t01	Wine grape	mitochondrion	36.21	27.81

Protein Annotations

EnsemblPlants:CDX83516	EnsemblPlantsGene:GSBRNA2T00139112001	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0046983
PANTHER:PTHR33124	PANTHER:PTHR33124:SF3	ProteinID:CDX83516	ProteinID:CDX83516.1	SEG:seg	UniParc:UPI000253FCCD
MapMan:15.5.32	:	:	:	:	:

Description

BnaA03g19900D

Coordinates

chrLK031832:+:1907449..1907799

Molecular Weight (calculated)

12784.3 Da

IEP (calculated)

6.677

GRAVY (calculated)

-0.388

Length

116 amino acids

Sequence
(BLAST)

001: MEKTLATSDN TRSISVLPSA AVKSRAAGFE RRTKRRLSQT KASVCVSGEE EDDEEEVKEK IEALQRIIPG GTALGVDALF EETAGYIMSL QCQIKTIKVL
101: TSFIQRLDKQ DMKFGG

Best Arabidopsis Sequence Match ( AT2G42870.1 )
(BLAST)

001: MEETLATPDA TRRSLSPSCS ATVKSRAAGF ERRTKRRLSE TNASVREDRE EAEEEEDEVK EKIEALQRII PGGAALGVDA LFEETAGYIL SLQCQIKTIK
101: VLTSFLQRID QEDMKFGG

Arabidopsis Description

PAR1Transcription factor PAR1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SJH0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.