Factsheet for Solyc07g056360.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc04g054470.2.1
Solyc04g078690.2.1
Solyc09g076050.2.1
Solyc11g005780.1.1
Solyc11g013370.1.1
Solyc11g072320.1.1
Solyc11g072390.1.1
Solyc12g088790.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G42870.1	Solyc11g072320.1.1	AT2G43650.1	21798944
AT2G42870.1	Solyc11g072390.1.1	AT2G43650.1	21798944
AT2G42870.1	Solyc11g013370.1.1	AT2G44950.1	21798944
AT2G42870.1	Solyc09g076050.2.1	AT3G22440.1	21798944
AT2G42870.1	Solyc12g088790.1.1	AT3G50330.1	21798944
AT2G42870.1	Solyc11g005780.1.1	AT4G00120.1	21798944
AT2G42870.1	Solyc04g054470.2.1	AT4G39690.1	21798944
AT2G42870.1	Solyc04g078690.2.1	AT5G67110.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400044708	Potato	cytosol	79.81	76.15
AT3G58850.1	Thale cress	plastid	50.0	44.07
AT2G42870.1	Thale cress	plastid	50.0	44.07
Bra000276.1-P	Field mustard	plastid	49.04	43.97
Bra004712.1-P	Field mustard	plastid	49.04	43.97
Bra016854.1-P	Field mustard	plastid	49.04	43.97
CDX83516	Canola	plastid	49.04	43.97
CDY14860	Canola	plastid	49.04	43.97
CDY42818	Canola	plastid	49.04	43.59
CDY00592	Canola	plastid	48.08	43.1
CDY68147	Canola	plastid	48.08	43.1
CDX89007	Canola	plastid	48.08	43.1
Bra014551.1-P	Field mustard	plastid	48.08	43.1
CDY50830	Canola	plastid	47.12	42.24
CDX71918	Canola	plastid	43.27	41.67
CDY49257	Canola	plastid	46.15	41.38
Bra007422.1-P	Field mustard	plastid	46.15	41.38
KRH73670	Soybean	plastid	50.0	40.31
KRH14475	Soybean	nucleus	49.04	36.69
VIT_12s0142g00160.t01	Wine grape	mitochondrion	41.35	28.48

Protein Annotations

EnsemblPlants:Solyc07g056360.1.1	EnsemblPlantsGene:Solyc07g056360.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0046983
ncoils:Coil	PANTHER:PTHR33124	PANTHER:PTHR33124:SF3	SEG:seg	UniParc:UPI000276B06C	UniProt:K4CGG9
MapMan:15.5.32	:	:	:	:	:

Description

No Description!

Coordinates

chr7:+:64237098..64237412

Molecular Weight (calculated)

11895.2 Da

IEP (calculated)

6.637

GRAVY (calculated)

-0.842

Length

104 amino acids

Sequence
(BLAST)

001: MESSCNREES SATFSRKDKN VCKRQKRRRE SGYIVKNNEE EEEEVEEKIL ALQKIVPGGE TLGVDRLFEE TAGYILQLQC QLKALKVLAN FVEGNDKQRM
101: KLGG

Best Arabidopsis Sequence Match ( AT2G42870.1 )
(BLAST)

001: MEETLATPDA TRRSLSPSCS ATVKSRAAGF ERRTKRRLSE TNASVREDRE EAEEEEDEVK EKIEALQRII PGGAALGVDA LFEETAGYIL SLQCQIKTIK
101: VLTSFLQRID QEDMKFGG

Arabidopsis Description

PAR1Transcription factor PAR1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SJH0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.