CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG91301
KRH04603
KRH04711
KRH05665
KRH15381
KRH28464
KRH30315
KRH33115
KRH35520
KRH43245
KRH50217
KRH53884
KRH57944
KRH59405
KRH64060
KRH71214
KRH75261
KRH77007

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G42870.1	KRH50217	AT2G43650.1	21798944
AT2G42870.1	KRH71214	AT2G43650.1	21798944
AT2G42870.1	KRH30315	AT2G44950.1	21798944
AT2G42870.1	KRH75261	AT2G44950.1	21798944
AT2G42870.1	KRG91301	AT3G22440.1	21798944
AT2G42870.1	KRH35520	AT3G22440.1	21798944
AT2G42870.1	KRH04603	AT3G50330.1	21798944
AT2G42870.1	KRH28464	AT3G50330.1	21798944
AT2G42870.1	KRH57944	AT3G50330.1	21798944
AT2G42870.1	KRH77007	AT3G50330.1	21798944
AT2G42870.1	KRH53884	AT4G00120.1	21798944
AT2G42870.1	KRH64060	AT4G00120.1	21798944
AT2G42870.1	KRH33115	AT4G39690.1	21798944
AT2G42870.1	KRH43245	AT4G39690.1	21798944
AT2G42870.1	KRH59405	AT4G39690.1	21798944
AT2G42870.1	KRH04711	AT5G67110.1	21798944
AT2G42870.1	KRH05665	AT5G67110.1	21798944
AT2G42870.1	KRH15381	AT5G67110.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH73670	Soybean	plastid	74.82	80.62
Solyc07g056360.1.1	Tomato	nucleus	36.69	49.04
PGSC0003DMT400044708	Potato	cytosol	34.53	44.04
Bra000276.1-P	Field mustard	plastid	35.25	42.24
CDX83516	Canola	plastid	35.25	42.24
CDY42818	Canola	plastid	35.25	41.88
Bra014551.1-P	Field mustard	plastid	34.53	41.38
Bra016854.1-P	Field mustard	plastid	34.53	41.38
CDX89007	Canola	plastid	34.53	41.38
CDY00592	Canola	plastid	34.53	41.38
CDY14860	Canola	plastid	34.53	41.38
AT3G58850.1	Thale cress	plastid	34.53	40.68
CDY68147	Canola	plastid	33.81	40.52
Bra004712.1-P	Field mustard	plastid	33.81	40.52
CDX71918	Canola	plastid	30.22	38.89
CDY49257	Canola	plastid	32.37	38.79
CDY50830	Canola	plastid	32.37	38.79
Bra007422.1-P	Field mustard	plastid	32.37	38.79
AT2G42870.1	Thale cress	plastid	31.65	37.29
VIT_12s0142g00160.t01	Wine grape	mitochondrion	33.81	31.13

Protein Annotations

EMBL:ACUP02008504	EMBL:KT031122	EnsemblPlants:KRH14475	EnsemblPlantsGene:GLYMA_14G028000	EntrezGene:100817215	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0046983	PANTHER:PTHR33124	PANTHER:PTHR33124:SF3	ProteinID:KRH14475
ProteinID:KRH14475.1	SEG:seg	UniParc:UPI0001BA8D47	UniProt:I1M6X1	MapMan:15.5.32	:

Description

hypothetical protein

Coordinates

chr14:-:2025377..2027067

Molecular Weight (calculated)

15928.6 Da

IEP (calculated)

4.976

GRAVY (calculated)

-1.049

Length

139 amino acids

Sequence
(BLAST)

001: MPSPSSMEQE DNTIIPTFLR KPAEDQNNNN SPTPSHKSLH VFRRSRRRWR KEVAVKDAVQ EEEDEEKEEG EDGGDDREEI ERKIHALQRI VPGGESLGVD
101: KLFDETAGYI LALQYQVKAL RALTGFFEKL EKEKTKFGG

Best Arabidopsis Sequence Match ( AT3G58850.1 )
(BLAST)

001: MEKTLATSHT KRSSPPSPSS AVNTSSTGFN RRTRQRLSDA TASVSETDVE DEDEDEEGVE EKIEALQTIV PGGTELGVDA LFEETASYIL ALQCQINAIK
101: VLTTFLERCE KKDMKFGG

Arabidopsis Description

PAR2Transcription factor PAR2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LXR7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.