Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- cytosol 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G50330.1 | KRH04603 | AT3G50330.1 | 21798944 |
| AT3G50330.1 | KRH28464 | AT3G50330.1 | 21798944 |
| AT3G50330.1 | KRH57944 | AT3G50330.1 | 21798944 |
| AT3G50330.1 | KRH77007 | AT3G50330.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH28464 | Soybean | nucleus | 86.06 | 89.26 |
| Solyc12g088790.1.1 | Tomato | nucleus | 32.67 | 67.77 |
| KRH57944 | Soybean | nucleus | 59.36 | 58.66 |
| PGSC0003DMT400048857 | Potato | nucleus | 34.26 | 58.11 |
| KRH04603 | Soybean | nucleus | 64.54 | 57.45 |
| CDY12799 | Canola | nucleus | 46.61 | 53.67 |
| Bra037128.1-P | Field mustard | cytoskeleton, cytosol, nucleus | 43.82 | 53.66 |
| CDY18636 | Canola | nucleus | 43.43 | 53.17 |
| Bra036071.1-P | Field mustard | nucleus | 44.62 | 52.58 |
| Bra012128.1-P | Field mustard | nucleus | 45.82 | 52.51 |
| CDY01443 | Canola | nucleus | 45.82 | 52.51 |
| CDY30593 | Canola | nucleus | 44.22 | 52.11 |
| CDX81342 | Canola | cytoskeleton, cytosol, nucleus | 42.63 | 51.69 |
| Bra030002.1-P | Field mustard | nucleus | 47.01 | 51.3 |
| CDX83121 | Canola | nucleus | 47.01 | 51.3 |
| CDX68583 | Canola | nucleus | 46.22 | 51.1 |
| CDY43559 | Canola | nucleus | 47.01 | 51.08 |
| CDY63952 | Canola | nucleus | 47.01 | 51.08 |
| Bra036801.1-P | Field mustard | nucleus | 47.01 | 51.08 |
| CDY17765 | Canola | nucleus | 45.42 | 50.44 |
| AT3G50330.1 | Thale cress | nucleus | 46.22 | 50.22 |
| AT5G67060.1 | Thale cress | nucleus | 46.22 | 48.13 |
| PGSC0003DMT400010344 | Potato | nucleus | 42.63 | 47.77 |
| KRH52010 | Soybean | nucleus | 48.21 | 46.9 |
| KRH61303 | Soybean | nucleus | 47.01 | 44.7 |
| TraesCS7B01G160500.1 | Wheat | nucleus | 37.85 | 42.99 |
| HORVU7Hr1G054880.1 | Barley | nucleus | 37.45 | 42.34 |
| TraesCS7D01G263400.1 | Wheat | nucleus | 37.05 | 42.27 |
| TraesCS7A01G262600.1 | Wheat | nucleus | 37.05 | 42.27 |
| Os09t0455300-01 | Rice | nucleus | 39.44 | 41.95 |
| Zm00001d050016_P001 | Maize | nucleus | 39.44 | 41.08 |
| KRH52087 | Soybean | cytosol, mitochondrion, nucleus | 15.14 | 40.86 |
| TraesCS5A01G237500.1 | Wheat | nucleus | 37.85 | 40.43 |
| TraesCS5D01G244000.1 | Wheat | nucleus | 37.85 | 40.43 |
| HORVU5Hr1G068110.1 | Barley | nucleus | 38.25 | 40.34 |
| TraesCS5B01G235200.1 | Wheat | nucleus | 37.45 | 40.0 |
| TraesCS6A01G142000.1 | Wheat | nucleus | 37.45 | 40.0 |
| Zm00001d020705_P001 | Maize | nucleus | 37.45 | 38.84 |
| Zm00001d031781_P001 | Maize | nucleus | 38.65 | 38.65 |
| GSMUA_Achr9P15380_001 | Banana | nucleus | 37.45 | 38.37 |
| KRH53884 | Soybean | nucleus | 34.66 | 37.18 |
| EER96848 | Sorghum | nucleus | 38.25 | 36.78 |
| EES15124 | Sorghum | nucleus | 39.04 | 36.43 |
| KRH64060 | Soybean | nucleus | 34.26 | 35.39 |
| Zm00001d005841_P001 | Maize | nucleus | 33.47 | 34.71 |
| KRH59559 | Soybean | nucleus | 34.26 | 32.33 |
| KRH43543 | Soybean | nucleus | 34.26 | 31.73 |
| KRH75991 | Soybean | nucleus, plastid | 19.12 | 26.97 |
| KRH65648 | Soybean | nucleus, plastid | 19.52 | 26.92 |
| KRH00301 | Soybean | nucleus, plastid | 18.73 | 26.7 |
| KRH49427 | Soybean | nucleus, plastid | 18.33 | 26.14 |
| KRH47179 | Soybean | nucleus | 31.87 | 18.56 |
| KRH44227 | Soybean | nucleus | 30.68 | 17.38 |
| KRH09982 | Soybean | nucleus | 30.28 | 17.08 |
| KRH23349 | Soybean | nucleus | 29.88 | 16.67 |
| KRG91108 | Soybean | nucleus | 23.11 | 16.43 |
| KRH35668 | Soybean | nucleus | 22.71 | 16.19 |
| KRH35669 | Soybean | nucleus | 21.91 | 15.36 |
| KRH15121 | Soybean | nucleus | 17.93 | 15.36 |
| KRH73015 | Soybean | nucleus | 17.93 | 15.25 |
| KRG91107 | Soybean | nucleus | 21.51 | 15.08 |
| KRH30960 | Soybean | nucleus | 18.33 | 13.57 |
| KRG97923 | Soybean | nucleus | 17.93 | 13.27 |
| KRH61404 | Soybean | nucleus | 17.53 | 13.25 |
| KRH05600 | Soybean | nucleus | 17.93 | 12.75 |
| KRH15444 | Soybean | nucleus | 16.73 | 12.0 |
Protein Annotations
| EntrezGene:100796649 | MapMan:15.5.32 | Gene3D:4.10.280.10 | EMBL:ACUP02000650 | ncoils:Coil | EnsemblPlantsGene:GLYMA_01G186700 |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 |
| InterPro:IPR036638 | UniProt:K7K4L8 | EnsemblPlants:KRH77007 | ProteinID:KRH77007 | ProteinID:KRH77007.1 | PFAM:PF00010 |
| PFscan:PS50888 | PANTHER:PTHR12565 | PANTHER:PTHR12565:SF74 | SMART:SM00353 | SUPFAM:SSF47459 | UniParc:UPI0002336FDB |
| InterPro:bHLH_dom | SEG:seg | : | : | : | : |
Description
hypothetical protein
Coordinates
chr1:-:52201236..52202389
Molecular Weight (calculated)
28295.2 Da
IEP (calculated)
9.762
GRAVY (calculated)
-0.483
Length
251 amino acids
Sequence
(BLAST)
(BLAST)
001: MDVDKLKTST SDSSMDMMMM MMQMEKFPEF CEPFYNNNTT TTTTTTLLYP ENEYFLNSTT TTLPVFPNVN NPNVITPPPT TLINPPPPSS NFVLQQPMTP
101: HLEPNPEKKN SVAAMREMIF RVAVMQPVHI DPESIKPPKR RNVKISKDPQ SVAARHRRER ISERIRILQR LVPGGTKMDT ASMLDEAIHY VKFLKKQVQT
201: LEQAGATRPL NVVGFPTTVS NANNNVNYSS FVKSCQPYPM LGSSASKQLL S
101: HLEPNPEKKN SVAAMREMIF RVAVMQPVHI DPESIKPPKR RNVKISKDPQ SVAARHRRER ISERIRILQR LVPGGTKMDT ASMLDEAIHY VKFLKKQVQT
201: LEQAGATRPL NVVGFPTTVS NANNNVNYSS FVKSCQPYPM LGSSASKQLL S
001: MDSDIMNMMM HQMEKLPEFC NPNSSFFSPD HNNTYPFLFN STHYQSDHSM TNEPGFRYGS GLLTNPSSIS PNTAYSSVFL DKRNNSNNNN NGTNMAAMRE
101: MIFRIAVMQP IHIDPEAVKP PKRRNVRISK DPQSVAARHR RERISERIRI LQRLVPGGTK MDTASMLDEA IHYVKFLKKQ VQSLEEQAVV TGGGGGGGGR
201: VLIGGGGMTA ASGGGGGGGV VMKGCGTVGT HQMVGNAQIL R
101: MIFRIAVMQP IHIDPEAVKP PKRRNVRISK DPQSVAARHR RERISERIRI LQRLVPGGTK MDTASMLDEA IHYVKFLKKQ VQSLEEQAVV TGGGGGGGGR
201: VLIGGGGMTA ASGGGGGGGV VMKGCGTVGT HQMVGNAQIL R
Arabidopsis Description
HEC1HEC1 [Source:UniProtKB/TrEMBL;Acc:A0A178UR10]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.