Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G50330.1 | KRH04603 | AT3G50330.1 | 21798944 |
| AT3G50330.1 | KRH28464 | AT3G50330.1 | 21798944 |
| AT3G50330.1 | KRH57944 | AT3G50330.1 | 21798944 |
| AT3G50330.1 | KRH77007 | AT3G50330.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH04603 | Soybean | nucleus | 89.76 | 80.85 |
| Solyc12g088790.1.1 | Tomato | nucleus | 31.5 | 66.12 |
| KRH28464 | Soybean | nucleus | 58.27 | 61.16 |
| KRH77007 | Soybean | nucleus | 58.66 | 59.36 |
| PGSC0003DMT400048857 | Potato | nucleus | 31.89 | 54.73 |
| Bra037128.1-P | Field mustard | cytoskeleton, cytosol, nucleus | 40.55 | 50.24 |
| Bra036071.1-P | Field mustard | nucleus | 42.13 | 50.23 |
| CDY30593 | Canola | nucleus | 41.73 | 49.77 |
| CDY18636 | Canola | nucleus | 40.16 | 49.76 |
| CDX81342 | Canola | cytoskeleton, cytosol, nucleus | 39.76 | 48.79 |
| CDY12799 | Canola | nucleus | 41.73 | 48.62 |
| Bra012128.1-P | Field mustard | nucleus | 41.34 | 47.95 |
| CDY01443 | Canola | nucleus | 41.34 | 47.95 |
| CDY17765 | Canola | nucleus | 42.52 | 47.79 |
| CDY63952 | Canola | nucleus | 43.31 | 47.62 |
| CDY43559 | Canola | nucleus | 43.31 | 47.62 |
| Bra036801.1-P | Field mustard | nucleus | 43.31 | 47.62 |
| CDX68583 | Canola | nucleus | 42.52 | 47.58 |
| AT3G50330.1 | Thale cress | nucleus | 42.91 | 47.19 |
| Bra030002.1-P | Field mustard | nucleus | 42.13 | 46.52 |
| CDX83121 | Canola | nucleus | 42.13 | 46.52 |
| PGSC0003DMT400010344 | Potato | nucleus | 39.76 | 45.09 |
| AT5G67060.1 | Thale cress | nucleus | 42.52 | 44.81 |
| KRH52087 | Soybean | cytosol, mitochondrion, nucleus | 15.75 | 43.01 |
| KRH52010 | Soybean | nucleus | 42.13 | 41.47 |
| KRH61303 | Soybean | nucleus | 42.91 | 41.29 |
| TraesCS7B01G160500.1 | Wheat | nucleus | 35.43 | 40.72 |
| HORVU7Hr1G054880.1 | Barley | nucleus | 35.43 | 40.54 |
| TraesCS7A01G262600.1 | Wheat | nucleus | 35.04 | 40.45 |
| TraesCS7D01G263400.1 | Wheat | nucleus | 35.04 | 40.45 |
| Os09t0455300-01 | Rice | nucleus | 35.83 | 38.56 |
| Zm00001d050016_P001 | Maize | nucleus | 35.04 | 36.93 |
| GSMUA_Achr9P15380_001 | Banana | nucleus | 35.43 | 36.73 |
| TraesCS5A01G237500.1 | Wheat | nucleus | 33.46 | 36.17 |
| TraesCS5D01G244000.1 | Wheat | nucleus | 33.46 | 36.17 |
| HORVU5Hr1G068110.1 | Barley | nucleus | 33.86 | 36.13 |
| Zm00001d020705_P001 | Maize | nucleus | 34.25 | 35.95 |
| TraesCS6A01G142000.1 | Wheat | nucleus | 33.07 | 35.74 |
| TraesCS5B01G235200.1 | Wheat | nucleus | 33.07 | 35.74 |
| Zm00001d031781_P001 | Maize | nucleus | 34.65 | 35.06 |
| EES15124 | Sorghum | nucleus | 37.01 | 34.94 |
| KRH53884 | Soybean | nucleus | 31.89 | 34.62 |
| KRH64060 | Soybean | nucleus | 32.28 | 33.74 |
| EER96848 | Sorghum | nucleus | 34.25 | 33.33 |
| KRH59559 | Soybean | nucleus | 33.86 | 32.33 |
| Zm00001d005841_P001 | Maize | nucleus | 30.32 | 31.82 |
| KRH43543 | Soybean | nucleus | 33.46 | 31.37 |
| KRH65648 | Soybean | nucleus, plastid | 20.08 | 28.02 |
| KRH75991 | Soybean | nucleus, plastid | 19.29 | 27.53 |
| KRH00301 | Soybean | nucleus, plastid | 18.9 | 27.27 |
| KRH49427 | Soybean | nucleus, plastid | 18.5 | 26.7 |
| KRH47179 | Soybean | nucleus | 30.32 | 17.87 |
| KRH44227 | Soybean | nucleus | 30.32 | 17.38 |
| KRH09982 | Soybean | nucleus | 29.92 | 17.08 |
| KRG91108 | Soybean | nucleus | 23.23 | 16.71 |
| KRH23349 | Soybean | nucleus | 29.53 | 16.67 |
| KRH35668 | Soybean | nucleus | 22.05 | 15.91 |
| KRH61404 | Soybean | nucleus | 20.08 | 15.36 |
| KRH15121 | Soybean | nucleus | 17.72 | 15.36 |
| KRH73015 | Soybean | nucleus | 17.72 | 15.25 |
| KRG91107 | Soybean | nucleus | 21.26 | 15.08 |
| KRH35669 | Soybean | nucleus | 21.26 | 15.08 |
| KRH30960 | Soybean | nucleus | 19.29 | 14.45 |
| KRG97923 | Soybean | nucleus | 18.9 | 14.16 |
| KRH05600 | Soybean | nucleus | 18.5 | 13.31 |
| KRH15444 | Soybean | nucleus | 17.32 | 12.57 |
Protein Annotations
| MapMan:15.5.32 | Gene3D:4.10.280.10 | UniProt:A0A0R0JZA5 | EMBL:ACUP02003165 | ncoils:Coil | EnsemblPlantsGene:GLYMA_05G094900 |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 |
| InterPro:IPR036638 | EnsemblPlants:KRH57944 | ProteinID:KRH57944 | ProteinID:KRH57944.1 | PFAM:PF00010 | PFscan:PS50888 |
| PANTHER:PTHR12565 | PANTHER:PTHR12565:SF74 | SMART:SM00353 | SUPFAM:SSF47459 | UniParc:UPI0006ED52EC | InterPro:bHLH_dom |
| SEG:seg | : | : | : | : | : |
Description
hypothetical protein
Coordinates
chr5:+:24303729..24304949
Molecular Weight (calculated)
28223.7 Da
IEP (calculated)
8.479
GRAVY (calculated)
-0.481
Length
254 amino acids
Sequence
(BLAST)
(BLAST)
001: MDVDIVKTSS NNNNMDVMAM MMQMEKFPEL FCDPFYTTSY QETDLLSSGS SSTTSASTLF NNNSIVTTTP PPTTTLVDPT PSNVVQFSKI DDLFQHQHQQ
101: QPMEMIFRIA VMQPVHIDPE SIKPPKRRNV KISKDPQSVA ARHRRERISE RIRILQRLVP GGTKMDTASM LDEAIHYVKF LKKQVQTLEQ AGANTSPHSN
201: TNSPNNHVVG AAGFPLGMSS NYSNNSSVNY SSLLMKGGCQ PCQMFGSTSK QLLS
101: QPMEMIFRIA VMQPVHIDPE SIKPPKRRNV KISKDPQSVA ARHRRERISE RIRILQRLVP GGTKMDTASM LDEAIHYVKF LKKQVQTLEQ AGANTSPHSN
201: TNSPNNHVVG AAGFPLGMSS NYSNNSSVNY SSLLMKGGCQ PCQMFGSTSK QLLS
001: MDSDIMNMMM HQMEKLPEFC NPNSSFFSPD HNNTYPFLFN STHYQSDHSM TNEPGFRYGS GLLTNPSSIS PNTAYSSVFL DKRNNSNNNN NGTNMAAMRE
101: MIFRIAVMQP IHIDPEAVKP PKRRNVRISK DPQSVAARHR RERISERIRI LQRLVPGGTK MDTASMLDEA IHYVKFLKKQ VQSLEEQAVV TGGGGGGGGR
201: VLIGGGGMTA ASGGGGGGGV VMKGCGTVGT HQMVGNAQIL R
101: MIFRIAVMQP IHIDPEAVKP PKRRNVRISK DPQSVAARHR RERISERIRI LQRLVPGGTK MDTASMLDEA IHYVKFLKKQ VQSLEEQAVV TGGGGGGGGR
201: VLIGGGGMTA ASGGGGGGGV VMKGCGTVGT HQMVGNAQIL R
Arabidopsis Description
HEC1HEC1 [Source:UniProtKB/TrEMBL;Acc:A0A178UR10]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.