Factsheet for TraesCS5D01G244000.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
MultiLoc:	cytosol
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS5A01G237500.1
TraesCS5B01G235200.1
TraesCS5D01G244000.1
TraesCS6A01G142000.1
TraesCS6A01G190600.1
TraesCS6A01G373500.2
TraesCS6B01G411300.1
TraesCS6D01G357700.1
TraesCS7A01G126900.1
TraesCS7A01G262600.1
TraesCS7B01G026300.1
TraesCS7B01G160500.1
TraesCS7D01G124700.1
TraesCS7D01G263400.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G50330.1	TraesCS5A01G237500.1	AT3G50330.1	21798944
AT3G50330.1	TraesCS5B01G235200.1	AT3G50330.1	21798944
AT3G50330.1	TraesCS5D01G244000.1	AT3G50330.1	21798944
AT3G50330.1	TraesCS6A01G142000.1	AT3G50330.1	21798944
AT3G50330.1	TraesCS7A01G262600.1	AT3G50330.1	21798944
AT3G50330.1	TraesCS7B01G160500.1	AT3G50330.1	21798944
AT3G50330.1	TraesCS7D01G263400.1	AT3G50330.1	21798944
AT3G50330.1	TraesCS6A01G190600.1	AT4G36930.1	17855426
AT3G50330.1	TraesCS6A01G373500.2	AT4G36930.1	17855426
AT3G50330.1	TraesCS6B01G411300.1	AT4G36930.1	17855426
AT3G50330.1	TraesCS6D01G357700.1	AT4G36930.1	17855426
AT3G50330.1	TraesCS7A01G126900.1	AT4G36930.1	17855426
AT3G50330.1	TraesCS7B01G026300.1	AT4G36930.1	17855426
AT3G50330.1	TraesCS7D01G124700.1	AT4G36930.1	17855426

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G237500.1	Wheat	nucleus	95.74	95.74
TraesCS5B01G235200.1	Wheat	nucleus	94.89	94.89
TraesCS6A01G142000.1	Wheat	nucleus	94.47	94.47
HORVU5Hr1G068110.1	Barley	nucleus	92.34	91.18
Os09t0455300-01	Rice	nucleus	72.34	72.03
EER96848	Sorghum	nucleus	72.34	65.13
Solyc12g088790.1.1	Tomato	nucleus	31.06	60.33
Zm00001d005841_P001	Maize	nucleus	60.85	59.09
TraesCS7D01G263400.1	Wheat	nucleus	54.47	58.18
PGSC0003DMT400048857	Potato	nucleus	34.89	55.41
GSMUA_Achr9P15380_001	Banana	nucleus	52.34	50.2
Bra037128.1-P	Field mustard	cytoskeleton, cytosol, nucleus	39.57	45.37
CDY18636	Canola	nucleus	39.15	44.88
CDX81342	Canola	cytoskeleton, cytosol, nucleus	39.15	44.44
Bra036071.1-P	Field mustard	nucleus	38.3	42.25
Bra012128.1-P	Field mustard	nucleus	39.15	42.01
CDY30593	Canola	nucleus	37.87	41.78
CDY12799	Canola	nucleus	38.72	41.74
CDY01443	Canola	nucleus	38.72	41.55
CDY43559	Canola	nucleus	40.0	40.69
CDY63952	Canola	nucleus	40.0	40.69
Bra036801.1-P	Field mustard	nucleus	40.0	40.69
AT5G67060.1	Thale cress	nucleus	41.28	40.25
AT3G50330.1	Thale cress	nucleus	38.72	39.39
CDX68583	Canola	nucleus	37.87	39.21
CDX83121	Canola	nucleus	38.3	39.13
Bra030002.1-P	Field mustard	nucleus	38.3	39.13
CDY17765	Canola	nucleus	37.45	38.94
KRH28464	Soybean	nucleus	40.0	38.84
PGSC0003DMT400010344	Potato	nucleus	36.17	37.95
KRH77007	Soybean	nucleus	40.43	37.85
TraesCS7D01G170900.1	Wheat	nucleus	28.94	36.76
KRH57944	Soybean	nucleus	36.17	33.46
KRH04603	Soybean	nucleus	38.72	32.27
TraesCS7D01G319600.1	Wheat	nucleus	32.77	24.29
TraesCS3D01G344600.1	Wheat	nucleus	21.7	23.94
TraesCS1D01G347900.1	Wheat	nucleus	15.32	19.35
TraesCS3D01G252700.1	Wheat	nucleus	30.64	18.65
TraesCS1D01G367700.1	Wheat	nucleus	28.94	16.96
TraesCS3D01G433200.1	Wheat	nucleus	17.02	15.69
TraesCS3D01G208500.2	Wheat	mitochondrion	31.49	15.61
TraesCS5D01G078800.1	Wheat	nucleus	18.72	15.22
TraesCS3D01G004300.1	Wheat	cytosol, nucleus, plastid	17.45	14.91
TraesCS4D01G079500.1	Wheat	nucleus	19.57	14.7
TraesCS7D01G230600.1	Wheat	nucleus	17.87	14.69
TraesCS6D01G256600.1	Wheat	nucleus	17.45	14.19
TraesCS6D01G256400.1	Wheat	nucleus	16.6	14.18
TraesCS6D01G256300.1	Wheat	nucleus	17.02	13.61
TraesCS6D01G256500.1	Wheat	cytosol	16.17	13.43
TraesCS2D01G193700.1	Wheat	nucleus	17.02	13.24
TraesCS5D01G411600.1	Wheat	nucleus	16.6	13.0
TraesCS4D01G257100.1	Wheat	nucleus	17.87	12.69

Protein Annotations

EnsemblPlants:TraesCS5D01G244000.1	EnsemblPlantsGene:TraesCS5D01G244000	Gene3D:4.10.280.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	InterPro:bHLH_dom	PANTHER:PTHR12565
PANTHER:PTHR12565:SF74	PFAM:PF00010	PFscan:PS50888	SEG:seg	SMART:SM00353	SUPFAM:SSF47459
TIGR:cd00083	MapMan:15.5.32	:	:	:	:

Description

No Description!

Coordinates

chr5D:-:352454064..352454771

Molecular Weight (calculated)

25163.9 Da

IEP (calculated)

6.603

GRAVY (calculated)

-0.217

Length

235 amino acids

Sequence
(BLAST)

001: MDFDLLMSSS PEAQLALMNT MLQLEQALND QSMMMGDASP PISPVQTPSH SLSPPPHVST TCMAADAGYF YHQDLQAHAA PAGYAGTGGV HQEYVVSPGA
101: AIFDGAGGAP QGYSSPSSSD AMREMIFHIA ALQPVEVDPE AVRPPKRRNV RTSKDPQSVA ARLRRERISE RIRVLQRLVP GGTKMDTASM LDEAIHYVKF
201: LKSQVQSLEL AAAATGAAAH RAAAFAYPAL QHAPW

Best Arabidopsis Sequence Match ( AT5G67060.1 )
(BLAST)

001: MDSDIMNMMM HQMEKLPEFC NPNSSFFSPD HNNTYPFLFN STHYQSDHSM TNEPGFRYGS GLLTNPSSIS PNTAYSSVFL DKRNNSNNNN NGTNMAAMRE
101: MIFRIAVMQP IHIDPEAVKP PKRRNVRISK DPQSVAARHR RERISERIRI LQRLVPGGTK MDTASMLDEA IHYVKFLKKQ VQSLEEQAVV TGGGGGGGGR
201: VLIGGGGMTA ASGGGGGGGV VMKGCGTVGT HQMVGNAQIL R

Arabidopsis Description

HEC1HEC1 [Source:UniProtKB/TrEMBL;Acc:A0A178UR10]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.