Factsheet for TraesCS4D01G257100.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4A01G047700.1	Wheat	nucleus	96.68	97.26
TraesCS4B01G257200.1	Wheat	nucleus	96.98	96.98
HORVU4Hr1G069820.2	Barley	nucleus	94.86	95.44
Os03t0205300-00	Rice	nucleus	69.79	67.74
KXG39918	Sorghum	nucleus	53.17	54.66
Zm00001d028085_P001	Maize	nucleus	45.02	50.34
Zm00001d048141_P001	Maize	cytosol	44.71	46.84
TraesCS1D01G347900.1	Wheat	nucleus	25.98	46.24
TraesCS5D01G078800.1	Wheat	nucleus	32.93	37.72
TraesCS3D01G433200.1	Wheat	nucleus	27.79	36.08
TraesCS4D01G079500.1	Wheat	nucleus	33.84	35.78
TraesCS2D01G193700.1	Wheat	nucleus	32.02	35.1
TraesCS5D01G411600.1	Wheat	nucleus	28.7	31.67
TraesCS3D01G004300.1	Wheat	cytosol, nucleus, plastid	18.13	21.82
TraesCS6D01G256600.1	Wheat	nucleus	17.82	20.42
TraesCS6D01G256300.1	Wheat	nucleus	17.52	19.73
TraesCS6D01G256500.1	Wheat	cytosol	16.62	19.43
TraesCS6D01G256400.1	Wheat	nucleus	15.71	18.91
TraesCS7D01G263400.1	Wheat	nucleus	12.39	18.64
TraesCS7D01G230600.1	Wheat	nucleus	16.01	18.53
TraesCS5D01G244000.1	Wheat	nucleus	12.69	17.87
TraesCS7D01G170900.1	Wheat	nucleus	9.67	17.3
TraesCS3D01G344600.1	Wheat	nucleus	10.27	15.96
TraesCS7D01G319600.1	Wheat	nucleus	12.69	13.25
TraesCS1D01G367700.1	Wheat	nucleus	14.5	11.97
TraesCS3D01G252700.1	Wheat	nucleus	13.29	11.4
TraesCS3D01G208500.2	Wheat	mitochondrion	14.5	10.13

Protein Annotations

EnsemblPlants:TraesCS4D01G257100.1	EnsemblPlantsGene:TraesCS4D01G257100	Gene3D:4.10.280.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	InterPro:bHLH_dom	PANTHER:PTHR16223
PANTHER:PTHR16223:SF9	PFAM:PF00010	PFscan:PS50888	SEG:seg	SMART:SM00353	SUPFAM:SSF47459
TIGR:cd00083	MapMan:15.5.32	:	:	:	:

Description

No Description!

Coordinates

chr4D:+:426844330..426845746

Molecular Weight (calculated)

35750.4 Da

IEP (calculated)

5.236

GRAVY (calculated)

-0.708

Length

331 amino acids

Sequence
(BLAST)

001: MESSEASWHS FDPSVAAEDS EEMARLLGVQ FFGNEQKQHP AAAPPSSMYW PGQEAADQYY TSAPYCMQMQ EHASAGAGYY SHGYYDGDAT AMAGNFFVAP
101: EEQIMADPAG FMVDLNLQFD DQDDGADTSA AACKRKFGDQ NGTQSDTVAA PKKKARSTAP PVQRKGKSGA QPKKASKGSC SRGAQEENNG EANNNVQSSS
201: NYLSDEEGSL EMTSCSNMSS ASKKTSSSRG DHGLGGGAKA RAGRGAATDP QSLYARKRRE KINERLKVLQ NLIPNGTKVD ISTMLEEAVH YIKFMQLQIK
301: LLSSDDMWMF APIAYNGFNV GLDLKIAPPQ Q

Best Arabidopsis Sequence Match ( AT2G14760.1 )
(BLAST)

001: MEAMGEWSTG LGGIYTEEAD FMNQLLASYE QPCGGSSSET TATLTAYHHQ GSQWNGGFCF SQESSSYSGY CAAMPRQEED NNGMEDATIN TNLYLVGEET
101: SECDATEYSG KSLLPLETVA ENHDHSMLQP ENSLTTTTDE KMFNQCESSK KRTRATTTDK NKRANKARRS QKCVEMSGEN ENSGEEEYTE KAAGKRKTKP
201: LKPQKTCCSD DESNGGDTFL SKEDGEDSKA LNLNGKTRAS RGAATDPQSL YARKRRERIN ERLRILQHLV PNGTKVDIST MLEEAVQYVK FLQLQIKLLS
301: SDDLWMYAPI AYNGMDIGLD LKLNALTR

Arabidopsis Description

Basic helix-loop-helix (BHLH) DNA-binding superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4IGG9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.