Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4A01G047700.1 | Wheat | nucleus | 68.04 | 70.52 |
| HORVU4Hr1G069820.2 | Barley | nucleus | 67.74 | 70.21 |
| TraesCS4D01G257100.1 | Wheat | nucleus | 67.74 | 69.79 |
| TraesCS4B01G257200.1 | Wheat | nucleus | 67.16 | 69.18 |
| KXG39918 | Sorghum | nucleus | 51.03 | 54.04 |
| Zm00001d028085_P001 | Maize | nucleus | 43.99 | 50.68 |
| Zm00001d048141_P001 | Maize | cytosol | 46.04 | 49.68 |
| Os12t0589000-00 | Rice | nucleus | 34.02 | 38.16 |
| Os07t0588400-00 | Rice | nucleus | 32.26 | 37.29 |
| Os11t0634700-00 | Rice | extracellular | 27.27 | 25.91 |
| Os02t0710300-01 | Rice | nucleus | 19.06 | 21.67 |
| Os01t0111500-01 | Rice | nucleus | 17.89 | 20.68 |
| Os09t0455300-01 | Rice | nucleus | 12.61 | 18.22 |
| Os06t0496400-01 | Rice | nucleus | 14.96 | 17.35 |
| Os01t0831000-01 | Rice | nucleus | 9.97 | 15.81 |
| Os08t0108500-01 | Rice | nucleus | 13.78 | 15.36 |
| Os01t0707500-01 | Rice | nucleus | 14.08 | 12.21 |
| Os01t0566800-00 | Rice | nucleus | 15.84 | 11.59 |
| Os05t0541400-00 | Rice | nucleus | 14.08 | 11.54 |
Protein Annotations
| MapMan:15.5.32 | Gene3D:4.10.280.10 | UniProt:A0A0N7KGS8 | ProteinID:BAS82857.1 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 |
| InterPro:IPR036638 | EnsemblPlantsGene:Os03g0205300 | EnsemblPlants:Os03t0205300-00 | PFAM:PF00010 | PFscan:PS50888 | PANTHER:PTHR16223 |
| PANTHER:PTHR16223:SF9 | SMART:SM00353 | SUPFAM:SSF47459 | UniParc:UPI000393ACA0 | InterPro:bHLH_dom | SEG:seg |
Description
basic helix-loop-helix protein 129, ROOT HAIR DEFECTIVE-SIX LIKE 4Similar to Helix-loop-helix DNA-binding domain containing protein. (Os03t0205300-00)
Coordinates
chr3:-:5495851..5497269
Molecular Weight (calculated)
36549.4 Da
IEP (calculated)
5.650
GRAVY (calculated)
-0.611
Length
341 amino acids
Sequence
(BLAST)
(BLAST)
001: MMESSEASWH SFDPSVAMED SEAMAQLLGV QYFGNDQEQQ QPAAAAPPAM YWPAHDAADQ YYGSAPYCYM QQQQHYGCYD GGAMVAGGDF FVPEEQLVAD
101: PSFMVDLNLE FEDQHGGDAG GAGSSAAAAA AATKMTPACK RKVEDHKDES CTDNVARKKA RSTAATVVQK KGNKNAQSKK AQKGACSRSS NQKESNGGGD
201: GGNVQSSSTN YLSDDDSLSL EMTSCSNVSS ASKKSSLSSP ATGHGGAKAR AGRGAATDPQ SLYARKRRER INERLKILQN LIPNGTKVDI STMLEEAVHY
301: VKFLQLQIKL LSSDDMWMFA PIAYNGVNVG LDLKISPPQQ Q
101: PSFMVDLNLE FEDQHGGDAG GAGSSAAAAA AATKMTPACK RKVEDHKDES CTDNVARKKA RSTAATVVQK KGNKNAQSKK AQKGACSRSS NQKESNGGGD
201: GGNVQSSSTN YLSDDDSLSL EMTSCSNVSS ASKKSSLSSP ATGHGGAKAR AGRGAATDPQ SLYARKRRER INERLKILQN LIPNGTKVDI STMLEEAVHY
301: VKFLQLQIKL LSSDDMWMFA PIAYNGVNVG LDLKISPPQQ Q
001: MEAMGEWSTG LGGIYTEEAD FMNQLLASYE QPCGGSSSET TATLTAYHHQ GSQWNGGFCF SQESSSYSGY CAAMPRQEED NNGMEDATIN TNLYLVGEET
101: SECDATEYSG KSLLPLETVA ENHDHSMLQP ENSLTTTTDE KMFNQCESSK KRTRATTTDK NKRANKARRS QKCVEMSGEN ENSGEEEYTE KAAGKRKTKP
201: LKPQKTCCSD DESNGGDTFL SKEDGEDSKA LNLNGKTRAS RGAATDPQSL YARKRRERIN ERLRILQHLV PNGTKVDIST MLEEAVQYVK FLQLQIKLLS
301: SDDLWMYAPI AYNGMDIGLD LKLNALTR
101: SECDATEYSG KSLLPLETVA ENHDHSMLQP ENSLTTTTDE KMFNQCESSK KRTRATTTDK NKRANKARRS QKCVEMSGEN ENSGEEEYTE KAAGKRKTKP
201: LKPQKTCCSD DESNGGDTFL SKEDGEDSKA LNLNGKTRAS RGAATDPQSL YARKRRERIN ERLRILQHLV PNGTKVDIST MLEEAVQYVK FLQLQIKLLS
301: SDDLWMYAPI AYNGMDIGLD LKLNALTR
Arabidopsis Description
Basic helix-loop-helix (BHLH) DNA-binding superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4IGG9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.