Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- cytosol 1
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Os02t0805250-00 | |
| Os06t0164400-01 | |
| Os12t0175500-01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G00120.1 | Os12t0175500-01 | AT2G38270.1 | 21798944 |
| AT5G09750.1 | Os02t0805250-00 | AT4G36930.1 | 17855426 |
| AT5G09750.1 | Os06t0164400-01 | AT4G36930.1 | 17855426 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr6P18580_001 | Banana | cytosol | 30.72 | 77.05 |
| Zm00001d049721_P001 | Maize | nucleus | 66.99 | 71.43 |
| Zm00001d035027_P001 | Maize | nucleus | 78.1 | 71.34 |
| EES14382 | Sorghum | nucleus | 80.07 | 70.4 |
| TraesCS7A01G323000.1 | Wheat | nucleus | 71.24 | 69.65 |
| TraesCS7D01G319600.1 | Wheat | nucleus | 71.57 | 69.09 |
| TraesCS7B01G223900.1 | Wheat | nucleus | 71.9 | 68.54 |
| GSMUA_Achr5P01290_001 | Banana | nucleus | 42.16 | 65.15 |
| GSMUA_Achr7P23410_001 | Banana | endoplasmic reticulum, extracellular, vacuole | 35.62 | 64.88 |
| GSMUA_Achr11P... | Banana | nucleus | 38.24 | 61.26 |
| HORVU7Hr1G077270.3 | Barley | cytosol | 63.4 | 57.23 |
| Bra028620.1-P | Field mustard | nucleus | 38.89 | 55.61 |
| CDX85799 | Canola | nucleus | 38.89 | 55.61 |
| CDY64847 | Canola | nucleus | 38.89 | 55.35 |
| VIT_04s0044g01040.t01 | Wine grape | nucleus | 39.54 | 54.26 |
| AT5G09750.1 | Thale cress | nucleus | 39.22 | 53.57 |
| CDY21597 | Canola | nucleus | 37.58 | 51.57 |
| KRH43543 | Soybean | nucleus | 40.2 | 45.39 |
| KRH59559 | Soybean | nucleus | 39.22 | 45.11 |
| CDX91916 | Canola | cytosol | 26.14 | 44.94 |
| CDX74329 | Canola | cytosol | 26.47 | 44.51 |
| AT4G00120.1 | Thale cress | nucleus | 28.43 | 43.94 |
| Bra000979.1-P | Field mustard | cytosol | 26.47 | 43.78 |
| KRH53884 | Soybean | nucleus | 33.01 | 43.16 |
| KRH64060 | Soybean | nucleus | 33.66 | 42.39 |
| PGSC0003DMT400073760 | Potato | nucleus | 32.03 | 37.4 |
| Os09t0455300-01 | Rice | nucleus | 28.76 | 37.29 |
| Solyc11g005780.1.1 | Tomato | nucleus | 32.35 | 34.98 |
| Os01t0831000-01 | Rice | nucleus | 17.65 | 25.12 |
| Os01t0707500-01 | Rice | nucleus | 22.22 | 17.3 |
| Os05t0541400-00 | Rice | nucleus | 23.2 | 17.07 |
| Os01t0566800-00 | Rice | nucleus | 24.51 | 16.09 |
| Os07t0588400-00 | Rice | nucleus | 14.71 | 15.25 |
| Os02t0710300-01 | Rice | nucleus | 14.05 | 14.33 |
| Os03t0205300-00 | Rice | nucleus | 15.36 | 13.78 |
| Os01t0111500-01 | Rice | nucleus | 13.07 | 13.56 |
| Os12t0589000-00 | Rice | nucleus | 13.4 | 13.49 |
| Os11t0634700-00 | Rice | extracellular | 14.71 | 12.53 |
| Os06t0496400-01 | Rice | nucleus | 11.11 | 11.56 |
Protein Annotations
| MapMan:15.5.32 | Gene3D:4.10.280.10 | EntrezGene:9271209 | ProteinID:BAH94084.1 | ProteinID:BAT03476.1 | UniProt:C7J662 |
| ncoils:Coil | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0046983 | InterPro:HLH_DNA-bd_sf |
| InterPro:IPR011598 | InterPro:IPR036638 | EnsemblPlantsGene:Os08g0108500 | EnsemblPlants:Os08t0108500-01 | PFAM:PF00010 | PFscan:PS50888 |
| PANTHER:PTHR12565 | PANTHER:PTHR12565:SF294 | SMART:SM00353 | SUPFAM:SSF47459 | UniParc:UPI0001B66A93 | RefSeq:XP_015649611.1 |
| InterPro:bHLH_dom | SEG:seg | : | : | : | : |
Description
basic helix-loop-helix protein 124Similar to Transcription factor LAX PANICLE. (Os08t0108500-01)
Coordinates
chr8:-:419186..420578
Molecular Weight (calculated)
32561.3 Da
IEP (calculated)
6.885
GRAVY (calculated)
-0.746
Length
306 amino acids
Sequence
(BLAST)
(BLAST)
001: MDNMTHNSSS SSSWDLDMSL GSHHHPLLFD QPPPPPPPPP PPPLPFHLHH HPLDPSPSSS LFPPPPHHHH HAHHLHHPLD LDQRRGHHDY GGGDQGGDEE
101: LRLQQEAAAG GGGGGQDGGG GGDQDADEEL GAMKEMMYRI AAMQPVDIDP ATIKKPRRRN VRISDDPQSV AARHRRERIS ERIRILQRLV PGGTKMDTAS
201: MLDEAIRYIK FLKRQVQELQ HQPGPPPPPY PAGAAPAAGP STSAVGPPGR PFLPLGGGGP MIDWVGLTRP VDIHGPTSSS SSSSMGGALG FGFGCGGGGQ
301: SSHGMH
101: LRLQQEAAAG GGGGGQDGGG GGDQDADEEL GAMKEMMYRI AAMQPVDIDP ATIKKPRRRN VRISDDPQSV AARHRRERIS ERIRILQRLV PGGTKMDTAS
201: MLDEAIRYIK FLKRQVQELQ HQPGPPPPPY PAGAAPAAGP STSAVGPPGR PFLPLGGGGP MIDWVGLTRP VDIHGPTSSS SSSSMGGALG FGFGCGGGGQ
301: SSHGMH
001: MNNYNMNPSL FQNYTWNNII NSSNNNNKND DHHHQHNNDP IGMAMDQYTQ LHIFNPFSSS HFPPLSSSLT TTTLLSGDQE DDEDEEEPLE ELGAMKEMMY
101: KIAAMQSVDI DPATVKKPKR RNVRISDDPQ SVAARHRRER ISERIRILQR LVPGGTKMDT ASMLDEAIRY VKFLKRQIRL LNNNTGYTPP PPQDQASQAV
201: TTSWVSPPPP PSFGRGGRGV GELI
101: KIAAMQSVDI DPATVKKPKR RNVRISDDPQ SVAARHRRER ISERIRILQR LVPGGTKMDT ASMLDEAIRY VKFLKRQIRL LNNNTGYTPP PPQDQASQAV
201: TTSWVSPPPP PSFGRGGRGV GELI
Arabidopsis Description
HEC3Transcription factor HEC3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LXD8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.