Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, extracellular, vacuole
Predictor Summary:
Predictor Summary:
- nucleus 3
- extracellular 5
- endoplasmic reticulum 5
- vacuole 5
- plasma membrane 4
- golgi 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr6P18580_001 | Banana | cytosol | 51.19 | 70.49 |
| GSMUA_Achr5P01290_001 | Banana | nucleus | 61.9 | 52.53 |
| GSMUA_Achr11P... | Banana | nucleus | 56.55 | 49.74 |
| GSMUA_Achr8P23350_001 | Banana | nucleus | 41.67 | 45.16 |
| Bra028620.1-P | Field mustard | nucleus | 55.95 | 43.93 |
| CDX85799 | Canola | nucleus | 55.95 | 43.93 |
| CDY64847 | Canola | nucleus | 55.95 | 43.72 |
| VIT_04s0044g01040.t01 | Wine grape | nucleus | 56.55 | 42.6 |
| GSMUA_Achr9P29130_001 | Banana | nucleus | 38.1 | 41.83 |
| AT5G09750.1 | Thale cress | nucleus | 54.76 | 41.07 |
| CDY21597 | Canola | nucleus | 53.57 | 40.36 |
| CDX91916 | Canola | cytosol | 41.67 | 39.33 |
| AT4G00120.1 | Thale cress | nucleus | 44.05 | 37.37 |
| KRH59559 | Soybean | nucleus | 58.33 | 36.84 |
| CDX74329 | Canola | cytosol | 39.88 | 36.81 |
| KRH53884 | Soybean | nucleus | 50.6 | 36.32 |
| Zm00001d049721_P001 | Maize | nucleus | 61.9 | 36.24 |
| Bra000979.1-P | Field mustard | cytosol | 39.88 | 36.22 |
| KRH43543 | Soybean | nucleus | 58.33 | 36.16 |
| GSMUA_Achr1P14400_001 | Banana | nucleus | 35.71 | 35.93 |
| Os08t0108500-01 | Rice | nucleus | 64.88 | 35.62 |
| KRH64060 | Soybean | nucleus | 51.19 | 35.39 |
| TraesCS7A01G323000.1 | Wheat | nucleus | 62.5 | 33.55 |
| TraesCS7D01G319600.1 | Wheat | nucleus | 62.5 | 33.12 |
| TraesCS7B01G223900.1 | Wheat | nucleus | 62.5 | 32.71 |
| GSMUA_Achr3P01250_001 | Banana | cytosol, nucleus, plastid | 23.21 | 32.23 |
| PGSC0003DMT400073760 | Potato | nucleus | 50.0 | 32.06 |
| GSMUA_Achr6P16890_001 | Banana | nucleus | 25.6 | 31.62 |
| Zm00001d035027_P001 | Maize | nucleus | 62.5 | 31.34 |
| HORVU7Hr1G077270.3 | Barley | cytosol | 62.5 | 30.97 |
| Solyc11g005780.1.1 | Tomato | nucleus | 51.19 | 30.39 |
| GSMUA_Achr9P15380_001 | Banana | nucleus | 44.05 | 30.2 |
| EES14382 | Sorghum | nucleus | 61.9 | 29.89 |
| GSMUA_Achr10P... | Banana | nucleus | 42.86 | 29.75 |
| GSMUA_Achr4P23240_001 | Banana | nucleus | 23.81 | 27.4 |
| GSMUA_Achr4P18820_001 | Banana | nucleus | 29.76 | 24.39 |
| GSMUA_AchrUn_... | Banana | nucleus | 37.5 | 23.08 |
| GSMUA_Achr3P25950_001 | Banana | nucleus | 41.07 | 19.6 |
| GSMUA_Achr8P24970_001 | Banana | nucleus | 38.69 | 18.68 |
| GSMUA_Achr9P09600_001 | Banana | nucleus | 24.4 | 14.86 |
| GSMUA_Achr2P17130_001 | Banana | nucleus | 27.38 | 14.56 |
| GSMUA_AchrUn_... | Banana | nucleus | 25.6 | 14.38 |
| GSMUA_Achr6P07760_001 | Banana | nucleus | 24.4 | 14.29 |
| GSMUA_Achr10P... | Banana | nucleus | 24.4 | 13.76 |
| GSMUA_Achr3P18870_001 | Banana | nucleus | 27.98 | 13.58 |
| GSMUA_Achr2P22860_001 | Banana | nucleus | 25.6 | 13.35 |
| GSMUA_Achr6P09370_001 | Banana | nucleus | 25.6 | 12.68 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr7P23410_001 | EnsemblPlants:GSMUA_Achr7T23410_001 | EnsemblPlantsGene:GSMUA_Achr7G23410_001 | Gene3D:4.10.280.10 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | InterPro:bHLH_dom |
| PANTHER:PTHR12565 | PANTHER:PTHR12565:SF125 | PFAM:PF00010 | PFscan:PS50888 | SEG:seg | SignalP:SignalP-noTM |
| SMART:SM00353 | SUPFAM:SSF47459 | UniParc:UPI00029562BD | UniProt:M0TK27 | MapMan:15.5.32 | : |
Description
Whole genome shotgun sequence of line PN40024, scaffold_44.assembly12x (Fragment) [Source:GMGC_GENE;Acc:GSMUA_Achr7G23410_001]
Coordinates
chr7:+:25607212..25608034
Molecular Weight (calculated)
18591.7 Da
IEP (calculated)
11.094
GRAVY (calculated)
-0.339
Length
168 amino acids
Sequence
(BLAST)
(BLAST)
001: MGSFGGFLIL LHNAIILLPS PYLNSETKCK SMSHILCDSL GAVKEMMYRI AAMQPVDVDP ATIRKPRRRN VRISDDPQSV AARHRRERIS ERFRILQRLV
101: PGGTKMDTAT MLDEAIRYVK FLKRQVQQLQ PTSAEARASS SSPSSSAMGP PPGLGFGAHV QGGHRPMH
101: PGGTKMDTAT MLDEAIRYVK FLKRQVQQLQ PTSAEARASS SSPSSSAMGP PPGLGFGAHV QGGHRPMH
001: MNNYNMNPSL FQNYTWNNII NSSNNNNKND DHHHQHNNDP IGMAMDQYTQ LHIFNPFSSS HFPPLSSSLT TTTLLSGDQE DDEDEEEPLE ELGAMKEMMY
101: KIAAMQSVDI DPATVKKPKR RNVRISDDPQ SVAARHRRER ISERIRILQR LVPGGTKMDT ASMLDEAIRY VKFLKRQIRL LNNNTGYTPP PPQDQASQAV
201: TTSWVSPPPP PSFGRGGRGV GELI
101: KIAAMQSVDI DPATVKKPKR RNVRISDDPQ SVAARHRRER ISERIRILQR LVPGGTKMDT ASMLDEAIRY VKFLKRQIRL LNNNTGYTPP PPQDQASQAV
201: TTSWVSPPPP PSFGRGGRGV GELI
Arabidopsis Description
HEC3Transcription factor HEC3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LXD8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.