Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- plastid 2
- nucleus 2
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d005094_P001 | |
| Zm00001d018416_P001 | |
| Zm00001d044606_P001 | |
| Zm00001d045212_P001 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d035027_P001 | Maize | nucleus | 84.32 | 72.24 |
| GSMUA_Achr6P18580_001 | Banana | cytosol | 30.66 | 72.13 |
| EES14382 | Sorghum | nucleus | 84.67 | 69.83 |
| Os08t0108500-01 | Rice | nucleus | 71.43 | 66.99 |
| TraesCS7A01G323000.1 | Wheat | nucleus | 72.13 | 66.13 |
| TraesCS7D01G319600.1 | Wheat | nucleus | 72.13 | 65.3 |
| TraesCS7B01G223900.1 | Wheat | nucleus | 72.82 | 65.11 |
| GSMUA_Achr7P23410_001 | Banana | endoplasmic reticulum, extracellular, vacuole | 36.24 | 61.9 |
| GSMUA_Achr5P01290_001 | Banana | nucleus | 41.81 | 60.61 |
| GSMUA_Achr11P... | Banana | nucleus | 39.02 | 58.64 |
| HORVU7Hr1G077270.3 | Barley | cytosol | 65.85 | 55.75 |
| CDX85799 | Canola | nucleus | 39.02 | 52.34 |
| Bra028620.1-P | Field mustard | nucleus | 39.02 | 52.34 |
| CDY64847 | Canola | nucleus | 39.02 | 52.09 |
| VIT_04s0044g01040.t01 | Wine grape | nucleus | 39.37 | 50.67 |
| CDY21597 | Canola | nucleus | 38.68 | 49.78 |
| AT5G09750.1 | Thale cress | nucleus | 38.68 | 49.55 |
| CDX91916 | Canola | cytosol | 27.53 | 44.38 |
| KRH43543 | Soybean | nucleus | 39.37 | 41.7 |
| KRH53884 | Soybean | nucleus | 33.8 | 41.45 |
| KRH59559 | Soybean | nucleus | 38.33 | 41.35 |
| CDX74329 | Canola | cytosol | 26.13 | 41.21 |
| KRH64060 | Soybean | nucleus | 34.49 | 40.74 |
| Bra000979.1-P | Field mustard | cytosol | 26.13 | 40.54 |
| AT4G00120.1 | Thale cress | nucleus | 27.53 | 39.9 |
| PGSC0003DMT400073760 | Potato | nucleus | 34.15 | 37.4 |
| Solyc11g005780.1.1 | Tomato | nucleus | 34.15 | 34.63 |
| Zm00001d050016_P001 | Maize | nucleus | 28.22 | 33.61 |
| Zm00001d020705_P001 | Maize | nucleus | 27.87 | 33.06 |
| Zm00001d031781_P001 | Maize | nucleus | 27.53 | 31.47 |
| Zm00001d005841_P001 | Maize | nucleus | 25.44 | 30.17 |
| Zm00001d042989_P001 | Maize | nucleus, plastid | 17.77 | 24.17 |
| Zm00001d042988_P001 | Maize | nucleus, plastid | 17.77 | 24.17 |
| Zm00001d038863_P001 | Maize | nucleus | 26.13 | 18.94 |
| Zm00001d043699_P001 | Maize | nucleus | 25.09 | 17.06 |
| Zm00001d011187_P001 | Maize | nucleus | 25.09 | 16.74 |
| Zm00001d044242_P001 | Maize | nucleus | 25.44 | 15.18 |
| Zm00001d006733_P001 | Maize | nucleus | 14.29 | 14.34 |
| Zm00001d017804_P001 | Maize | nucleus | 14.63 | 14.24 |
| Zm00001d048786_P001 | Maize | nucleus, plastid | 10.8 | 13.3 |
| Zm00001d021988_P001 | Maize | nucleus | 13.59 | 13.22 |
| Zm00001d008444_P001 | Maize | nucleus | 13.94 | 12.31 |
| Zm00001d041351_P001 | Maize | nucleus | 12.54 | 11.84 |
| Zm00001d028085_P001 | Maize | nucleus | 10.8 | 10.47 |
| Zm00001d048141_P001 | Maize | cytosol | 11.15 | 10.13 |
Protein Annotations
| MapMan:15.5.32 | Gene3D:4.10.280.10 | ProteinID:AQK51193.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | UniProt:K7TXN6 |
| PFAM:PF00010 | PFscan:PS50888 | PANTHER:PTHR12565 | PANTHER:PTHR12565:SF294 | SMART:SM00353 | SUPFAM:SSF47459 |
| UniParc:UPI000220D6E9 | EnsemblPlantsGene:Zm00001d049721 | EnsemblPlants:Zm00001d049721_P001 | EnsemblPlants:Zm00001d049721_T001 | InterPro:bHLH_dom | SEG:seg |
Description
bHLH-transcription factor 85Transcription factor IND
Coordinates
chr4:+:41503972..41504835
Molecular Weight (calculated)
31105.6 Da
IEP (calculated)
7.623
GRAVY (calculated)
-0.641
Length
287 amino acids
Sequence
(BLAST)
(BLAST)
001: MNNITQHNSS SSWDLDMSLG THHHPLLFDS HPNPGPPPPP LSFHLSSSSH HPPAPHPAHH HPSLGPSLSS SLFPQPPHHH HHRLHRLGLD IDDPSSHSHG
101: HRGNDELEEM RKQHEAAAEH VDEELGAMKE MMYRIAAMQP VDIDPATVKK PRRRNVRISE DPQSVAARHR RERISERVRV LQRLVPGGTK MDTASMLDEA
201: IRYIKFLKRQ VQELQHPAHA AAGAGAGPSV SAVGGLPLID WAGLVRPVDI HGPTSPSSSS SMGGAGAHAA LGFGFSSAGG QSSHGMH
101: HRGNDELEEM RKQHEAAAEH VDEELGAMKE MMYRIAAMQP VDIDPATVKK PRRRNVRISE DPQSVAARHR RERISERVRV LQRLVPGGTK MDTASMLDEA
201: IRYIKFLKRQ VQELQHPAHA AAGAGAGPSV SAVGGLPLID WAGLVRPVDI HGPTSPSSSS SMGGAGAHAA LGFGFSSAGG QSSHGMH
001: MNNYNMNPSL FQNYTWNNII NSSNNNNKND DHHHQHNNDP IGMAMDQYTQ LHIFNPFSSS HFPPLSSSLT TTTLLSGDQE DDEDEEEPLE ELGAMKEMMY
101: KIAAMQSVDI DPATVKKPKR RNVRISDDPQ SVAARHRRER ISERIRILQR LVPGGTKMDT ASMLDEAIRY VKFLKRQIRL LNNNTGYTPP PPQDQASQAV
201: TTSWVSPPPP PSFGRGGRGV GELI
101: KIAAMQSVDI DPATVKKPKR RNVRISDDPQ SVAARHRRER ISERIRILQR LVPGGTKMDT ASMLDEAIRY VKFLKRQIRL LNNNTGYTPP PPQDQASQAV
201: TTSWVSPPPP PSFGRGGRGV GELI
Arabidopsis Description
HEC3Transcription factor HEC3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LXD8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.