Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d000046_P001 | |
| Zm00001d029976_P004 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G66470.1 | Zm00001d000046_P001 | AT5G47100.1 | 21798944 |
| AT1G66470.1 | Zm00001d029976_P004 | AT5G47100.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES00435 | Sorghum | nucleus | 61.85 | 69.31 |
| GSMUA_Achr3P01250_001 | Banana | cytosol, nucleus, plastid | 23.38 | 62.81 |
| TraesCS3D01G004300.1 | Wheat | cytosol, nucleus, plastid | 45.85 | 54.18 |
| TraesCS3A01G006300.1 | Wheat | cytosol, nucleus, plastid | 45.54 | 54.01 |
| TraesCS3B01G007700.1 | Wheat | nucleus | 45.54 | 54.01 |
| TraesCS3B01G010400.1 | Wheat | nucleus | 45.54 | 54.01 |
| Os01t0111500-01 | Rice | nucleus | 44.62 | 49.15 |
| Zm00001d017804_P001 | Maize | nucleus | 34.15 | 37.63 |
| GSMUA_Achr2P22860_001 | Banana | nucleus | 36.31 | 36.65 |
| GSMUA_Achr10P... | Banana | nucleus | 33.23 | 36.24 |
| KRH73015 | Soybean | nucleus | 31.69 | 34.92 |
| KRH15121 | Soybean | nucleus | 31.38 | 34.81 |
| CDY55674 | Canola | nucleus | 30.77 | 34.48 |
| CDY11694 | Canola | nucleus | 30.77 | 34.48 |
| CDX96145 | Canola | nucleus | 30.77 | 34.48 |
| CDX68049 | Canola | nucleus | 30.77 | 34.48 |
| AT1G66470.1 | Thale cress | nucleus | 31.38 | 34.23 |
| VIT_14s0006g01470.t01 | Wine grape | nucleus | 35.38 | 33.14 |
| AT5G37800.1 | Thale cress | nucleus | 30.77 | 32.57 |
| Solyc02g091440.1.1 | Tomato | nucleus | 31.69 | 32.49 |
| CDY61813 | Canola | nucleus | 30.46 | 32.46 |
| Bra019708.1-P | Field mustard | nucleus | 30.46 | 32.25 |
| PGSC0003DMT400078776 | Potato | nucleus | 31.38 | 32.18 |
| CDY58387 | Canola | nucleus | 30.15 | 31.92 |
| GSMUA_Achr6P09370_001 | Banana | nucleus | 32.92 | 31.56 |
| KRH30960 | Soybean | nucleus | 32.0 | 30.68 |
| KRG97923 | Soybean | nucleus | 31.69 | 30.38 |
| Bra004169.1-P | Field mustard | nucleus | 24.31 | 29.48 |
| Zm00001d021988_P001 | Maize | nucleus | 19.38 | 21.36 |
| Zm00001d006733_P001 | Maize | nucleus | 18.77 | 21.33 |
| Zm00001d048786_P001 | Maize | nucleus, plastid | 14.77 | 20.6 |
| Zm00001d020705_P001 | Maize | nucleus | 13.23 | 17.77 |
| Zm00001d041351_P001 | Maize | nucleus | 16.62 | 17.76 |
| Zm00001d050016_P001 | Maize | nucleus | 12.92 | 17.43 |
| Zm00001d005841_P001 | Maize | nucleus | 12.92 | 17.36 |
| Zm00001d031781_P001 | Maize | nucleus | 13.23 | 17.13 |
| Zm00001d042988_P001 | Maize | nucleus, plastid | 10.46 | 16.11 |
| Zm00001d042989_P001 | Maize | nucleus, plastid | 10.46 | 16.11 |
| Zm00001d028085_P001 | Maize | nucleus | 14.15 | 15.54 |
| Zm00001d048141_P001 | Maize | cytosol | 14.77 | 15.19 |
| Zm00001d049721_P001 | Maize | nucleus | 12.31 | 13.94 |
| Zm00001d035027_P001 | Maize | nucleus | 12.31 | 11.94 |
| Zm00001d038863_P001 | Maize | nucleus | 12.92 | 10.61 |
| Zm00001d011187_P001 | Maize | nucleus | 13.54 | 10.23 |
| Zm00001d043699_P001 | Maize | nucleus | 12.62 | 9.72 |
| Zm00001d044242_P001 | Maize | nucleus | 12.92 | 8.73 |
Protein Annotations
| EntrezGene:103636726 | MapMan:15.5.32 | Gene3D:4.10.280.10 | ProteinID:AQK89893.1 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | UniProt:K7VPC5 |
| PFAM:PF00010 | PFscan:PS50888 | PANTHER:PTHR16223 | PANTHER:PTHR16223:SF64 | SMART:SM00353 | SUPFAM:SSF47459 |
| UniParc:UPI00022119E7 | EnsemblPlantsGene:Zm00001d008444 | EnsemblPlants:Zm00001d008444_P001 | EnsemblPlants:Zm00001d008444_T001 | InterPro:bHLH_dom | SEG:seg |
Description
bHLH-transcription factor 19Transcription factor bHLH83
Coordinates
chr8:-:8757504..8759356
Molecular Weight (calculated)
33723.4 Da
IEP (calculated)
4.910
GRAVY (calculated)
-0.336
Length
325 amino acids
Sequence
(BLAST)
(BLAST)
001: MAQASKRSAF LRPVMYDDDE PSSISMSLEL FGYHNGGVGV VVDDGDEAAD GGSASALSLQ LAFDDDSFVK GGCECDDAGG GGASAADYYY YGSWAGAYGG
101: SGATSSGSNS SVLSFEQAGS GGGQRHHLVY GEDGCALWMD DAGAGMVVEH PPAQQQQQHG SGCDFGLIGS SPDDAGLPIQ LEPGTVQLPA KAPPHKRARR
201: DGDQVQAAAA AKKQCGGVGA RMKSKQAKLA APAPTKDPQS VAAKVRREKI AEKLKVLQDL VPNGTKVDLV TMLEKAITYV KFLQLQVKVL AADEFWPAQG
301: GKAPDLSQVK DALDAILSSS QQCPK
101: SGATSSGSNS SVLSFEQAGS GGGQRHHLVY GEDGCALWMD DAGAGMVVEH PPAQQQQQHG SGCDFGLIGS SPDDAGLPIQ LEPGTVQLPA KAPPHKRARR
201: DGDQVQAAAA AKKQCGGVGA RMKSKQAKLA APAPTKDPQS VAAKVRREKI AEKLKVLQDL VPNGTKVDLV TMLEKAITYV KFLQLQVKVL AADEFWPAQG
301: GKAPDLSQVK DALDAILSSS QQCPK
001: MALVNDHPNE TNYLSKQNSS SSEDLSSPGL DQPDAAYAGG GGGGGSASSS STMNSDHQQH QGFVFYPSGE DHHNSLMDFN GSSFLNFDHH ESFPPPAISC
101: GGSSGGGGFS FLEGNNMSYG FTNWNHQHHM DIISPRSTET PQGQKDWLYS DSTVVTTGSR NESLSPKSAG NKRSHTGEST QPSKKLSSGV TGKTKPKPTT
201: SPKDPQSLAA KNRRERISER LKILQELVPN GTKVDLVTML EKAISYVKFL QVQVKVLATD EFWPAQGGKA PDISQVKDAI DAILSSSQRD RNSNLITN
101: GGSSGGGGFS FLEGNNMSYG FTNWNHQHHM DIISPRSTET PQGQKDWLYS DSTVVTTGSR NESLSPKSAG NKRSHTGEST QPSKKLSSGV TGKTKPKPTT
201: SPKDPQSLAA KNRRERISER LKILQELVPN GTKVDLVTML EKAISYVKFL QVQVKVLATD EFWPAQGGKA PDISQVKDAI DAILSSSQRD RNSNLITN
Arabidopsis Description
BHLH83RHD6 [Source:UniProtKB/TrEMBL;Acc:A0A178W430]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.