Factsheet for VIT_14s0006g01470.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_02s0236g00140.t01
VIT_02s0236g00150.t01
VIT_12s0142g00160.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G66470.1	VIT_12s0142g00160.t01	AT2G42870.1	21798944
AT1G66470.1	VIT_02s0236g00140.t01	AT5G47100.1	21798944
AT1G66470.1	VIT_02s0236g00150.t01	AT5G47100.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr3P01250_001	Banana	cytosol, nucleus, plastid	25.36	72.73
PGSC0003DMT400078776	Potato	nucleus	47.84	52.37
Solyc02g091440.1.1	Tomato	nucleus	47.55	52.05
KRH15121	Soybean	nucleus	43.52	51.54
KRH73015	Soybean	nucleus	43.8	51.53
KRG97923	Soybean	nucleus	46.4	47.49
KRH30960	Soybean	nucleus	45.82	46.9
TraesCS3A01G006300.1	Wheat	cytosol, nucleus, plastid	34.58	43.8
CDX68049	Canola	nucleus	36.31	43.45
CDX96145	Canola	nucleus	36.31	43.45
CDY11694	Canola	nucleus	36.31	43.45
CDY55674	Canola	nucleus	36.31	43.45
TraesCS3B01G007700.1	Wheat	nucleus	34.29	43.43
GSMUA_Achr10P...	Banana	nucleus	37.18	43.29
TraesCS3D01G004300.1	Wheat	cytosol, nucleus, plastid	34.29	43.27
TraesCS3B01G010400.1	Wheat	nucleus	34.01	43.07
GSMUA_Achr2P22860_001	Banana	nucleus	39.19	42.24
AT1G66470.1	Thale cress	nucleus	36.02	41.95
CDY61813	Canola	nucleus	35.45	40.33
CDY58387	Canola	nucleus	35.45	40.07
Bra019708.1-P	Field mustard	nucleus	35.16	39.74
Os02t0710300-01	Rice	nucleus	34.29	39.67
GSMUA_Achr6P09370_001	Banana	nucleus	38.33	39.23
Bra004169.1-P	Field mustard	nucleus	29.97	38.81
AT5G37800.1	Thale cress	nucleus	34.01	38.44
TraesCS6D01G256300.1	Wheat	nucleus	32.28	38.1
TraesCS6D01G256500.1	Wheat	cytosol	30.84	37.81
TraesCS6A01G276100.1	Wheat	nucleus	31.7	37.8
TraesCS6B01G303500.1	Wheat	nucleus	31.12	37.76
TraesCS6D01G256600.1	Wheat	nucleus	31.41	37.72
TraesCS6B01G303600.1	Wheat	cytosol, nucleus, plastid	30.84	37.68
EES07381	Sorghum	nucleus	33.14	37.58
EES00435	Sorghum	nucleus	31.12	37.24
TraesCS6A01G276200.1	Wheat	cytosol, nucleus, plastid	30.84	37.02
Zm00001d017804_P001	Maize	nucleus	31.41	36.95
Os01t0111500-01	Rice	nucleus	30.84	36.27
TraesCS7D01G230600.1	Wheat	nucleus	29.68	36.01
TraesCS7B01G195800.1	Wheat	nucleus	29.97	35.62
TraesCS7A01G229900.1	Wheat	nucleus	29.11	35.44
Zm00001d008444_P001	Maize	nucleus	33.14	35.38
TraesCS6D01G256400.1	Wheat	nucleus	27.95	35.27
HORVU7Hr1G046580.1	Barley	plasma membrane, vacuole	29.97	31.42
Os06t0496400-01	Rice	nucleus	23.92	28.23
VIT_08s0058g00110.t01	Wine grape	plastid	11.82	25.47
VIT_18s0001g09210.t01	Wine grape	nucleus	16.71	22.75
VIT_03s0091g00730.t01	Wine grape	nucleus	20.75	20.57
VIT_18s0001g10400.t01	Wine grape	nucleus	13.54	18.95
VIT_04s0044g01040.t01	Wine grape	nucleus	11.53	17.94
VIT_07s0031g00550.t01	Wine grape	nucleus	12.39	17.06
VIT_09s0002g02700.t01	Wine grape	nucleus	14.41	10.62

Protein Annotations

EntrezGene:100255367	wikigene:100255367	MapMan:15.5.32	Gene3D:4.10.280.10	ProteinID:CBI33538	ProteinID:CBI33538.3
UniProt:D7TSR6	EMBL:FN596245	GO:GO:0001046	GO:GO:0001228	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006366	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0045944	GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598
InterPro:IPR036638	EntrezGene:LOC100255367	wikigene:LOC100255367	PFAM:PF00010	PFscan:PS50888	PANTHER:PTHR16223
PANTHER:PTHR16223:SF19	SMART:SM00353	SUPFAM:SSF47459	UniParc:UPI00015C9703	ArrayExpress:VIT_14s0006g01470	EnsemblPlantsGene:VIT_14s0006g01470
EnsemblPlants:VIT_14s0006g01470.t01	RefSeq:XP_002272414	RefSeq:XP_002272414.1	InterPro:bHLH_dom	SEG:seg	:

Description

No Description!

Coordinates

chr14:+:17518670..17520154

Molecular Weight (calculated)

38465.9 Da

IEP (calculated)

6.351

GRAVY (calculated)

-0.651

Length

347 amino acids

Sequence
(BLAST)

001: MALAKDRTPH DLSMGSVQHC SLIYGNVIGG SAVEGVSDLS SPGVYGLDDY HKAVIEEGDE SEKSSAGFVK PYVMSHASSI SGASSANCNA IRPMNYQPQE
101: AHSVITFKTR YENFMHNSGS LLSFEQNERG SQVTYTKVCH EDDYSNWEDN LNYDYQNQLN PKLNSNPRLL EDFNCFPASS YGSMSGNTPK ENQHGEESFG
201: WIYTEATAVT DSIQESATKE SCFHKRPHMG ETMQALKRQC TAATRKSKPK SIPPKDPQSL AAKNRRERIS ERLKILQDLV PNGSKVDLVT MLEKAISYVK
301: FLQLQVKVLA TDEFWPVQGG KAPDISQVKE AIDAILSSQR DTNSSSK

Best Arabidopsis Sequence Match ( AT1G66470.1 )
(BLAST)

001: MALVNDHPNE TNYLSKQNSS SSEDLSSPGL DQPDAAYAGG GGGGGSASSS STMNSDHQQH QGFVFYPSGE DHHNSLMDFN GSSFLNFDHH ESFPPPAISC
101: GGSSGGGGFS FLEGNNMSYG FTNWNHQHHM DIISPRSTET PQGQKDWLYS DSTVVTTGSR NESLSPKSAG NKRSHTGEST QPSKKLSSGV TGKTKPKPTT
201: SPKDPQSLAA KNRRERISER LKILQELVPN GTKVDLVTML EKAISYVKFL QVQVKVLATD EFWPAQGGKA PDISQVKDAI DAILSSSQRD RNSNLITN

Arabidopsis Description

BHLH83RHD6 [Source:UniProtKB/TrEMBL;Acc:A0A178W430]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.