Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_18s0001g10400.t01 | Wine grape | nucleus | 57.54 | 58.47 |
| GSMUA_Achr9P29130_001 | Banana | nucleus | 32.54 | 53.59 |
| Solyc04g078790.2.1 | Tomato | nucleus | 51.59 | 52.85 |
| PGSC0003DMT400020558 | Potato | nucleus | 51.59 | 51.38 |
| KRH61303 | Soybean | nucleus | 50.79 | 48.48 |
| GSMUA_Achr10P... | Banana | nucleus | 42.06 | 43.8 |
| VIT_04s0044g01040.t01 | Wine grape | nucleus | 31.35 | 35.43 |
| VIT_08s0058g00110.t01 | Wine grape | plastid | 21.83 | 34.16 |
| VIT_18s0001g09210.t01 | Wine grape | nucleus | 19.44 | 19.22 |
| VIT_09s0002g02700.t01 | Wine grape | nucleus | 31.75 | 16.99 |
| VIT_03s0091g00730.t01 | Wine grape | nucleus | 20.24 | 14.57 |
| VIT_14s0006g01470.t01 | Wine grape | nucleus | 17.06 | 12.39 |
Protein Annotations
| EntrezGene:100254182 | wikigene:100254182 | MapMan:15.5.32 | Gene3D:4.10.280.10 | ProteinID:CBI21418 | ProteinID:CBI21418.3 |
| ncoils:Coil | UniProt:D7SVW9 | EMBL:FN595233 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | EntrezGene:LOC100254182 | wikigene:LOC100254182 |
| PFAM:PF00010 | PFscan:PS50888 | PANTHER:PTHR12565 | PANTHER:PTHR12565:SF74 | SMART:SM00353 | SUPFAM:SSF47459 |
| UniParc:UPI00015C9E7F | ArrayExpress:VIT_07s0031g00550 | EnsemblPlantsGene:VIT_07s0031g00550 | EnsemblPlants:VIT_07s0031g00550.t01 | RefSeq:XP_002277850 | RefSeq:XP_002277850.1 |
| InterPro:bHLH_dom | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr7:+:16738987..16739745
Molecular Weight (calculated)
27810.1 Da
IEP (calculated)
9.776
GRAVY (calculated)
-0.311
Length
252 amino acids
Sequence
(BLAST)
(BLAST)
001: MDIDVLKSTV QDQMDMMSMM MQMDKLPELF GPYQEPSELP EMEFSGGATA TTIGTAPPMF HSPLINPSSS ISFMSTPVQE PMTPPLLPHV GSGRLKSAGE
101: LCGVNPFSPP SEKKNSMAAM REMIFSIAVM QPIHIDPESV KPPKRRNVKI SKDPQSVAAR HRRERISERI RILQRLVPGG TKMDTASMLD EAIHYVKFLK
201: NQVQSLERAG AHRPMGVVGF PATTTSMANP NYSSLAKAFQ TSPMVGSMQM FR
101: LCGVNPFSPP SEKKNSMAAM REMIFSIAVM QPIHIDPESV KPPKRRNVKI SKDPQSVAAR HRRERISERI RILQRLVPGG TKMDTASMLD EAIHYVKFLK
201: NQVQSLERAG AHRPMGVVGF PATTTSMANP NYSSLAKAFQ TSPMVGSMQM FR
001: MDSDIMNMMM HQMEKLPEFC NPNSSFFSPD HNNTYPFLFN STHYQSDHSM TNEPGFRYGS GLLTNPSSIS PNTAYSSVFL DKRNNSNNNN NGTNMAAMRE
101: MIFRIAVMQP IHIDPEAVKP PKRRNVRISK DPQSVAARHR RERISERIRI LQRLVPGGTK MDTASMLDEA IHYVKFLKKQ VQSLEEQAVV TGGGGGGGGR
201: VLIGGGGMTA ASGGGGGGGV VMKGCGTVGT HQMVGNAQIL R
101: MIFRIAVMQP IHIDPEAVKP PKRRNVRISK DPQSVAARHR RERISERIRI LQRLVPGGTK MDTASMLDEA IHYVKFLKKQ VQSLEEQAVV TGGGGGGGGR
201: VLIGGGGMTA ASGGGGGGGV VMKGCGTVGT HQMVGNAQIL R
Arabidopsis Description
HEC1HEC1 [Source:UniProtKB/TrEMBL;Acc:A0A178UR10]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.