Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr6P18580_001 | Banana | cytosol | 28.51 | 56.56 |
| GSMUA_Achr8P23350_001 | Banana | nucleus | 34.3 | 53.55 |
| GSMUA_Achr9P29130_001 | Banana | nucleus | 30.99 | 49.02 |
| VIT_18s0001g10400.t01 | Wine grape | nucleus | 45.04 | 43.95 |
| GSMUA_Achr9P15380_001 | Banana | nucleus | 44.21 | 43.67 |
| Solyc04g078790.2.1 | Tomato | nucleus | 44.21 | 43.5 |
| GSMUA_Achr7P23410_001 | Banana | endoplasmic reticulum, extracellular, vacuole | 29.75 | 42.86 |
| VIT_07s0031g00550.t01 | Wine grape | nucleus | 43.8 | 42.06 |
| PGSC0003DMT400020558 | Potato | nucleus | 43.8 | 41.9 |
| KRH61303 | Soybean | nucleus | 44.21 | 40.53 |
| GSMUA_Achr5P01290_001 | Banana | nucleus | 31.41 | 38.38 |
| GSMUA_Achr11P... | Banana | nucleus | 30.17 | 38.22 |
| GSMUA_Achr1P14400_001 | Banana | nucleus | 26.03 | 37.72 |
| GSMUA_Achr3P01250_001 | Banana | cytosol, nucleus, plastid | 15.7 | 31.41 |
| GSMUA_Achr4P18820_001 | Banana | nucleus | 22.73 | 26.83 |
| GSMUA_Achr6P16890_001 | Banana | nucleus | 14.88 | 26.47 |
| GSMUA_Achr4P23240_001 | Banana | nucleus | 15.7 | 26.03 |
| GSMUA_AchrUn_... | Banana | nucleus | 26.45 | 23.44 |
| GSMUA_Achr3P25950_001 | Banana | nucleus | 30.58 | 21.02 |
| GSMUA_Achr8P24970_001 | Banana | nucleus | 27.27 | 18.97 |
| GSMUA_Achr6P07760_001 | Banana | nucleus | 19.01 | 16.03 |
| GSMUA_Achr2P17130_001 | Banana | nucleus | 19.42 | 14.87 |
| GSMUA_Achr2P22860_001 | Banana | nucleus | 19.42 | 14.6 |
| GSMUA_Achr9P09600_001 | Banana | nucleus | 16.12 | 14.13 |
| GSMUA_AchrUn_... | Banana | nucleus | 17.36 | 14.05 |
| GSMUA_Achr3P18870_001 | Banana | nucleus | 19.83 | 13.87 |
| GSMUA_Achr10P... | Banana | nucleus | 16.94 | 13.76 |
| GSMUA_Achr6P09370_001 | Banana | nucleus | 19.01 | 13.57 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr10P25590_001 | EnsemblPlants:GSMUA_Achr10T25590_001 | EnsemblPlantsGene:GSMUA_Achr10G25590_001 | Gene3D:4.10.280.10 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | InterPro:bHLH_dom |
| ncoils:Coil | PANTHER:PTHR12565 | PANTHER:PTHR12565:SF74 | PFAM:PF00010 | PFscan:PS50888 | SEG:seg |
| SMART:SM00353 | SUPFAM:SSF47459 | UniParc:UPI00029679DB | UniProt:M0RLD3 | MapMan:15.5.32 | : |
Description
bHelix-loop-helix transcription factor, putative [Source:GMGC_GENE;Acc:GSMUA_Achr10G25590_001]
Coordinates
chr10:-:29533816..29534544
Molecular Weight (calculated)
25670.5 Da
IEP (calculated)
8.115
GRAVY (calculated)
-0.302
Length
242 amino acids
Sequence
(BLAST)
(BLAST)
001: MDVDYLSSPT EAQMDLTTMV REMENLSGLS EAPLQPSESY SGGPSSHAFC SAGASTSLLV GGAPSSSAFG GPQDLLAPVF SNSPAAAELA LRGASHGCGR
101: RPSVAAMREM IFRIAAMQPI HIDPESVRPP KRRNVKISKD PQSVAARHRR ERISERIRIL QQLVPGGTKM DTASMLDEAI HYMKFLKSQL QSLQRAAAAH
201: RGAGAAGNAD FSMHGTGSSD GSCSFFLKGD GAPEQGFTMN TF
101: RPSVAAMREM IFRIAAMQPI HIDPESVRPP KRRNVKISKD PQSVAARHRR ERISERIRIL QQLVPGGTKM DTASMLDEAI HYMKFLKSQL QSLQRAAAAH
201: RGAGAAGNAD FSMHGTGSSD GSCSFFLKGD GAPEQGFTMN TF
001: MDNSDILMNM MMQQMEKLPE HFSNSNPNPN PHNIMMLSES NTHPFFFNPT HSHLPFDQTM PHHQPGLNFR YAPSPSSSLP EKRGGCSDNA NMAAMREMIF
101: RIAVMQPIHI DPESVKPPKR KNVRISKDPQ SVAARHRRER ISERIRILQR LVPGGTKMDT ASMLDEAIHY VKFLKKQVQS LEEHAVVNGG GMTAVAGGAL
201: AGTVGGGYGG KGCGIMRSDH HQMLGNAQIL R
101: RIAVMQPIHI DPESVKPPKR KNVRISKDPQ SVAARHRRER ISERIRILQR LVPGGTKMDT ASMLDEAIHY VKFLKKQVQS LEEHAVVNGG GMTAVAGGAL
201: AGTVGGGYGG KGCGIMRSDH HQMLGNAQIL R
Arabidopsis Description
HEC2Transcription factor HEC2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SND4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.