Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr6P18580_001 | Banana | cytosol | 17.82 | 50.82 |
| GSMUA_Achr1P14400_001 | Banana | nucleus | 23.56 | 49.1 |
| GSMUA_Achr9P29130_001 | Banana | nucleus | 17.24 | 39.22 |
| GSMUA_Achr7P23410_001 | Banana | endoplasmic reticulum, extracellular, vacuole | 18.68 | 38.69 |
| GSMUA_AchrUn_... | Banana | nucleus | 29.89 | 38.1 |
| GSMUA_Achr8P23350_001 | Banana | nucleus | 16.95 | 38.06 |
| GSMUA_Achr11P... | Banana | nucleus | 19.25 | 35.08 |
| GSMUA_Achr5P01290_001 | Banana | nucleus | 19.83 | 34.85 |
| Bra031275.1-P | Field mustard | nucleus | 32.47 | 34.04 |
| CDY51449 | Canola | nucleus | 32.47 | 34.04 |
| Bra001826.1-P | Field mustard | nucleus | 31.61 | 33.95 |
| CDY32423 | Canola | nucleus | 31.61 | 33.33 |
| CDY62045 | Canola | nucleus | 31.9 | 33.13 |
| CDY48884 | Canola | nucleus | 31.32 | 32.54 |
| AT3G21330.1 | Thale cress | nucleus | 33.62 | 31.37 |
| KRH47179 | Soybean | nucleus | 38.79 | 31.32 |
| GSMUA_Achr3P01250_001 | Banana | cytosol, nucleus, plastid | 10.63 | 30.58 |
| KRH44227 | Soybean | nucleus | 38.51 | 30.25 |
| GSMUA_Achr3P25950_001 | Banana | nucleus | 30.46 | 30.11 |
| KRH23349 | Soybean | nucleus | 38.51 | 29.78 |
| Solyc03g121240.1.1 | Tomato | nucleus | 32.18 | 29.47 |
| KRH09982 | Soybean | nucleus | 37.64 | 29.44 |
| PGSC0003DMT400006453 | Potato | nucleus | 32.18 | 29.02 |
| VIT_09s0002g02700.t01 | Wine grape | nucleus | 37.93 | 28.03 |
| GSMUA_Achr9P15380_001 | Banana | nucleus | 19.25 | 27.35 |
| GSMUA_Achr10P... | Banana | nucleus | 18.97 | 27.27 |
| GSMUA_Achr6P16890_001 | Banana | nucleus | 9.77 | 25.0 |
| GSMUA_Achr4P23240_001 | Banana | nucleus | 10.34 | 24.66 |
| GSMUA_Achr4P18820_001 | Banana | nucleus | 13.22 | 22.44 |
| GSMUA_AchrUn_... | Banana | nucleus | 14.66 | 17.06 |
| GSMUA_Achr2P17130_001 | Banana | nucleus | 15.23 | 16.77 |
| GSMUA_Achr9P09600_001 | Banana | nucleus | 12.93 | 16.3 |
| GSMUA_Achr6P07760_001 | Banana | nucleus | 13.22 | 16.03 |
| GSMUA_Achr3P18870_001 | Banana | nucleus | 14.66 | 14.74 |
| GSMUA_Achr10P... | Banana | nucleus | 12.07 | 14.09 |
| GSMUA_Achr2P22860_001 | Banana | nucleus | 12.64 | 13.66 |
| GSMUA_Achr6P09370_001 | Banana | nucleus | 12.36 | 12.68 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr8P24970_001 | EnsemblPlants:GSMUA_Achr8T24970_001 | EnsemblPlantsGene:GSMUA_Achr8G24970_001 | Gene3D:4.10.280.10 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | InterPro:bHLH_dom |
| PANTHER:PTHR12565 | PANTHER:PTHR12565:SF74 | PFAM:PF00010 | PFscan:PS50888 | SEG:seg | SMART:SM00353 |
| SUPFAM:SSF47459 | UniParc:UPI000294F3EA | UniProt:M0TTF0 | MapMan:15.5.32 | : | : |
Description
Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr8G24970_001]
Coordinates
chr8:+:28952433..28953479
Molecular Weight (calculated)
38292.9 Da
IEP (calculated)
6.325
GRAVY (calculated)
-0.427
Length
348 amino acids
Sequence
(BLAST)
(BLAST)
001: MDNLSWENPV AIRTKVSLWS NHHDNITDSS EGYNTSFKEK LELNEALLSS SLELQRILAA LQTSSSLDRI SERVEISTPS LGLGLLQNPA DSVLLRPVVG
101: ATLWEAASSP PIGASEELHV ISNTFDAQDD LSAIFSSCKN GNGSLDSHQA SVTSHCSSRK PSSKRKFDEF TRIGENYHIR SLLESNSSSK EGGFQISFTR
201: GQKLGFVQEG DYEIDNEAIA QVKEMIYRAA ALRPVSLVAE EAVEKPKRKN VRISSDPQTV AARQRRERIS EKLRVLQRLV PGGSKMDTAS MLDEAANYVK
301: FLKSQVMALE AMDNSWYDSV SSTTAARTLS TASEPGFSHA TFLLHPKP
101: ATLWEAASSP PIGASEELHV ISNTFDAQDD LSAIFSSCKN GNGSLDSHQA SVTSHCSSRK PSSKRKFDEF TRIGENYHIR SLLESNSSSK EGGFQISFTR
201: GQKLGFVQEG DYEIDNEAIA QVKEMIYRAA ALRPVSLVAE EAVEKPKRKN VRISSDPQTV AARQRRERIS EKLRVLQRLV PGGSKMDTAS MLDEAANYVK
301: FLKSQVMALE AMDNSWYDSV SSTTAARTLS TASEPGFSHA TFLLHPKP
001: MEGLESVYAQ AMYGMTRESK IMEHQGSDLI WGGNELMARE LCSSSSYHHQ LINPNLSSCF MSDLGVLGEI QQQQHVGNRA SSIDPSSLDC LLSATSNSNN
101: TSTEDDEGIS VLFSDCQTLW SFGGVSSAES ENREITTETT TTIKPKPLKR NRGGDGGTTE TTTTTTKPKS LKRNRGDETG SHFSLVHPQD DSEKGGFKLI
201: YDENQSKSKK PRTEKERGGS SNISFQHSTC LSDNVEPDAE AIAQMKEMIY RAAAFRPVNF GLEIVEKPKR KNVKISTDPQ TVAARQRRER ISEKIRVLQT
301: LVPGGTKMDT ASMLDEAANY LKFLRAQVKA LENLRPKLDQ TNLSFSSAPT SFPLFHPSFL PLQNPNQIHH PEC
101: TSTEDDEGIS VLFSDCQTLW SFGGVSSAES ENREITTETT TTIKPKPLKR NRGGDGGTTE TTTTTTKPKS LKRNRGDETG SHFSLVHPQD DSEKGGFKLI
201: YDENQSKSKK PRTEKERGGS SNISFQHSTC LSDNVEPDAE AIAQMKEMIY RAAAFRPVNF GLEIVEKPKR KNVKISTDPQ TVAARQRRER ISEKIRVLQT
301: LVPGGTKMDT ASMLDEAANY LKFLRAQVKA LENLRPKLDQ TNLSFSSAPT SFPLFHPSFL PLQNPNQIHH PEC
Arabidopsis Description
BHLH87Transcription factor bHLH87 [Source:UniProtKB/Swiss-Prot;Acc:Q8S3D2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.