Factsheet for VIT_09s0002g02700.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH09982	Soybean	nucleus	53.5	56.63
KRH23349	Soybean	nucleus	52.44	54.89
KRH47179	Soybean	nucleus	49.04	53.6
KRH44227	Soybean	nucleus	49.04	52.14
GSMUA_Achr1P14400_001	Banana	nucleus	18.47	52.1
Bra001826.1-P	Field mustard	nucleus	35.67	51.85
CDY32423	Canola	nucleus	36.09	51.52
CDY62045	Canola	nucleus	36.52	51.34
CDY51449	Canola	nucleus	35.88	50.9
Bra031275.1-P	Field mustard	nucleus	35.88	50.9
CDY48884	Canola	nucleus	35.24	49.55
AT3G21330.1	Thale cress	nucleus	38.22	48.26
PGSC0003DMT400006453	Potato	nucleus	35.88	43.78
Solyc03g121240.1.1	Tomato	nucleus	35.24	43.68
GSMUA_AchrUn_...	Banana	nucleus	22.72	39.19
GSMUA_Achr8P24970_001	Banana	nucleus	28.03	37.93
GSMUA_Achr3P25950_001	Banana	nucleus	26.33	35.23
VIT_04s0044g01040.t01	Wine grape	nucleus	16.14	34.08
VIT_18s0001g10400.t01	Wine grape	nucleus	17.2	32.66
VIT_07s0031g00550.t01	Wine grape	nucleus	16.99	31.75
TraesCS3B01G281600.1	Wheat	nucleus	25.27	31.32
TraesCS3A01G252200.1	Wheat	nucleus	25.27	30.83
TraesCS3D01G252700.1	Wheat	nucleus	25.27	30.83
Os01t0707500-01	Rice	nucleus	25.27	30.28
VIT_08s0058g00110.t01	Wine grape	plastid	10.19	29.81
Zm00001d043699_P001	Maize	nucleus	26.33	29.38
KXG33221	Sorghum	nucleus	25.9	29.19
HORVU3Hr1G066600.2	Barley	nucleus	25.05	29.14
HORVU1Hr1G079450.1	Barley	nucleus	24.42	28.75
TraesCS1A01G362800.1	Wheat	nucleus	23.57	28.1
TraesCS1D01G367700.1	Wheat	nucleus	23.78	27.93
EES18589	Sorghum	nucleus	23.57	27.68
Os05t0541400-00	Rice	nucleus	24.42	27.64
TraesCS1B01G380000.1	Wheat	nucleus	23.14	27.39
Zm00001d038863_P001	Maize	nucleus	22.93	27.27
Zm00001d011187_P001	Maize	nucleus	24.84	27.21
Os01t0566800-00	Rice	nucleus	25.05	25.32
Zm00001d044242_P001	Maize	nucleus	25.48	24.95
TraesCS3A01G207300.2	Wheat	extracellular	24.42	24.63
TraesCS3B01G233700.2	Wheat	extracellular, mitochondrion, nucleus, plastid	23.57	23.67
TraesCS3D01G208500.2	Wheat	mitochondrion	23.78	23.63
OQU87026	Sorghum	nucleus	22.93	23.43
VIT_18s0001g09210.t01	Wine grape	nucleus	12.53	23.14
HORVU3Hr1G048770.1	Barley	plastid	23.57	23.03
VIT_03s0091g00730.t01	Wine grape	nucleus	14.01	18.86
VIT_14s0006g01470.t01	Wine grape	nucleus	10.62	14.41

Protein Annotations

EntrezGene:100251455	wikigene:100251455	MapMan:15.5.32	Gene3D:4.10.280.10	ProteinID:CCB59369	ProteinID:CCB59369.1
ncoils:Coil	UniProt:F6HY46	EMBL:FN596494	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	EntrezGene:LOC100251455	wikigene:LOC100251455
PFAM:PF00010	PFscan:PS50888	PANTHER:PTHR12565	PANTHER:PTHR12565:SF293	SMART:SM00353	SUPFAM:SSF47459
UniParc:UPI0001983E66	ArrayExpress:VIT_09s0002g02700	EnsemblPlantsGene:VIT_09s0002g02700	EnsemblPlants:VIT_09s0002g02700.t01	RefSeq:XP_003632856	RefSeq:XP_003632856.1
RefSeq:XP_010654570.1	RefSeq:XP_010654572.1	RefSeq:XP_019077817.1	InterPro:bHLH_dom	SEG:seg	:

Description

No Description!

Coordinates

chr9:+:2453416..2457680

Molecular Weight (calculated)

51116.9 Da

IEP (calculated)

6.250

GRAVY (calculated)

-0.506

Length

471 amino acids

Sequence
(BLAST)

001: MDSLGWDGSP VVANASSLWS NQQSGVEQSL MVTNLNCCGY GGRMHLAEDM FDPIQELQKA QPSHGTSSSN KVSEMAQQLA PAFASDSIHV VSNLNLAADT
101: GLAKSVAGTN WEEALRAELG SSPLINRPYI MNPLGSLMAG FGKTQQFQVV NGFQDGTAGV SATGSLESLD CLLSATNSNT ETSIEDDGIS VIFSDCRNLW
201: NFGSGSAVSS GDSENNGFNT RKKEMRCAVN ELDETVSQGA SDRLANPGIC SETKPNSTKR SCDQNELKVS PNYHCFDLLQ SDACTPDGGF RLISENSPKP
301: KKPRAEKRPP SSSNINFQQP SSSASSVEEP DSEAIAQMKE IIYRAAAFRP VNFGMDAVEK PKRKNVRIST DPQTVAARQR RERISERIRV LQRLVPGGNK
401: MDTASMLDEA ANYLKFLRSQ VKALETLGHK LDSVNCVHTN LPFSALPFNH SFPMQTHLPL QNPSPIHQPR S

Best Arabidopsis Sequence Match ( AT3G21330.1 )
(BLAST)

001: MEGLESVYAQ AMYGMTRESK IMEHQGSDLI WGGNELMARE LCSSSSYHHQ LINPNLSSCF MSDLGVLGEI QQQQHVGNRA SSIDPSSLDC LLSATSNSNN
101: TSTEDDEGIS VLFSDCQTLW SFGGVSSAES ENREITTETT TTIKPKPLKR NRGGDGGTTE TTTTTTKPKS LKRNRGDETG SHFSLVHPQD DSEKGGFKLI
201: YDENQSKSKK PRTEKERGGS SNISFQHSTC LSDNVEPDAE AIAQMKEMIY RAAAFRPVNF GLEIVEKPKR KNVKISTDPQ TVAARQRRER ISEKIRVLQT
301: LVPGGTKMDT ASMLDEAANY LKFLRAQVKA LENLRPKLDQ TNLSFSSAPT SFPLFHPSFL PLQNPNQIHH PEC

Arabidopsis Description

BHLH87Transcription factor bHLH87 [Source:UniProtKB/Swiss-Prot;Acc:Q8S3D2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.