Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
| Predictors | GFP | MS/MS | Papers | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3A01G252200.1 | Wheat | nucleus | 87.65 | 91.97 |
| TraesCS3D01G252700.1 | Wheat | nucleus | 87.16 | 91.45 |
| TraesCS3B01G281600.1 | Wheat | nucleus | 84.2 | 89.74 |
| Os01t0707500-01 | Rice | nucleus | 61.23 | 63.1 |
| KXG33221 | Sorghum | nucleus | 60.0 | 58.13 |
| Zm00001d043699_P001 | Maize | nucleus | 57.04 | 54.74 |
| GSMUA_Achr1P14400_001 | Banana | nucleus | 22.47 | 54.49 |
| HORVU1Hr1G043780.1 | Barley | mitochondrion, nucleus | 6.67 | 45.0 |
| GSMUA_AchrUn_... | Banana | nucleus | 29.14 | 43.22 |
| HORVU1Hr1G079450.1 | Barley | nucleus | 39.26 | 39.75 |
| CDY32423 | Canola | nucleus | 25.68 | 31.52 |
| Bra031275.1-P | Field mustard | nucleus | 25.68 | 31.33 |
| CDY51449 | Canola | nucleus | 25.68 | 31.33 |
| HORVU0Hr1G019640.1 | Barley | cytosol | 14.32 | 31.18 |
| Bra001826.1-P | Field mustard | nucleus | 24.94 | 31.17 |
| HORVU7Hr1G054880.1 | Barley | nucleus | 17.04 | 31.08 |
| CDY62045 | Canola | nucleus | 25.68 | 31.04 |
| HORVU5Hr1G068110.1 | Barley | nucleus | 17.53 | 29.83 |
| CDY48884 | Canola | nucleus | 24.44 | 29.55 |
| PGSC0003DMT400006453 | Potato | nucleus | 28.15 | 29.53 |
| Solyc03g121240.1.1 | Tomato | nucleus | 26.67 | 28.42 |
| AT3G21330.1 | Thale cress | nucleus | 25.19 | 27.35 |
| KRH23349 | Soybean | nucleus | 29.63 | 26.67 |
| KRH09982 | Soybean | nucleus | 29.14 | 26.52 |
| KRH47179 | Soybean | nucleus | 27.65 | 25.99 |
| KRH44227 | Soybean | nucleus | 27.9 | 25.51 |
| HORVU3Hr1G048770.1 | Barley | plastid | 29.88 | 25.1 |
| VIT_09s0002g02700.t01 | Wine grape | nucleus | 29.14 | 25.05 |
| HORVU3Hr1G087710.1 | Barley | nucleus | 12.35 | 23.81 |
| HORVU7Hr1G077270.3 | Barley | cytosol | 16.54 | 19.76 |
| HORVU5Hr1G018100.1 | Barley | cytosol, mitochondrion, nucleus | 12.59 | 16.35 |
| HORVU5Hr1G097520.1 | Barley | nucleus | 11.6 | 16.1 |
| HORVU2Hr1G035190.9 | Barley | nucleus | 11.6 | 15.72 |
| HORVU4Hr1G069820.2 | Barley | nucleus | 11.36 | 13.98 |
| HORVU7Hr1G046580.1 | Barley | plasma membrane, vacuole | 10.86 | 13.29 |
| HORVU6Hr1G069690.3 | Barley | cytosol | 6.42 | 7.72 |
Protein Annotations
| EMBL:AK355455 | EnsemblPlants:HORVU3Hr1G066600.2 | EnsemblPlantsGene:HORVU3Hr1G066600 | Gene3D:4.10.280.10 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | InterPro:bHLH_dom |
| PANTHER:PTHR12565 | PANTHER:PTHR12565:SF288 | PFscan:PS50888 | SEG:seg | SMART:SM00353 | SUPFAM:SSF47459 |
| UniParc:UPI0002004927 | UniProt:F2CV03 | MapMan:15.5.32 | : | : | : |
Description
Predicted protein [Source:UniProtKB/TrEMBL;Acc:F2CV03]
Coordinates
chrchr3H:-:506184580..506187769
Molecular Weight (calculated)
41387.0 Da
IEP (calculated)
6.508
GRAVY (calculated)
-0.295
Length
405 amino acids
Sequence
(BLAST)
(BLAST)
001: MDTFGWSSGP GLHDDAYLPR PASQVMSCGR FDLDDAFLGQ LQCDFGGGGQ QVSSSYGNGA AAVGSAAGGS TGDGQLGFFG SGVDVFSSVV DGASAHDGLL
101: DSALAFSGVL PCGGDGDPGA VSNGAMFSGY SGTTVCNISS GESNNYSGGG GGGHDVAEVA SPTSTISPTT TSHPTITLAQ AALHESRKLP ADDCPATIAT
201: APPLPRAGTK RKAPATTATS ITFGLQDTNS AGAAGGYEPD MEAMAQVKEM IYRAAAMRPV SLVTESPAAG ISKPRRKNVR ISSDPQTVAA RLRRERVSDR
301: LRVLQKLVPG GSKMDTASML DEAASYLKFL KSQVQALETL GTSSSTGTGT SAAAAASTGR LLHSHSQQQH YYSNNPGFLG FPRNNNNNNM SSVFRNPDGN
401: SGRLL
101: DSALAFSGVL PCGGDGDPGA VSNGAMFSGY SGTTVCNISS GESNNYSGGG GGGHDVAEVA SPTSTISPTT TSHPTITLAQ AALHESRKLP ADDCPATIAT
201: APPLPRAGTK RKAPATTATS ITFGLQDTNS AGAAGGYEPD MEAMAQVKEM IYRAAAMRPV SLVTESPAAG ISKPRRKNVR ISSDPQTVAA RLRRERVSDR
301: LRVLQKLVPG GSKMDTASML DEAASYLKFL KSQVQALETL GTSSSTGTGT SAAAAASTGR LLHSHSQQQH YYSNNPGFLG FPRNNNNNNM SSVFRNPDGN
401: SGRLL
001: MEGLESVYAQ AMYGMTRESK IMEHQGSDLI WGGNELMARE LCSSSSYHHQ LINPNLSSCF MSDLGVLGEI QQQQHVGNRA SSIDPSSLDC LLSATSNSNN
101: TSTEDDEGIS VLFSDCQTLW SFGGVSSAES ENREITTETT TTIKPKPLKR NRGGDGGTTE TTTTTTKPKS LKRNRGDETG SHFSLVHPQD DSEKGGFKLI
201: YDENQSKSKK PRTEKERGGS SNISFQHSTC LSDNVEPDAE AIAQMKEMIY RAAAFRPVNF GLEIVEKPKR KNVKISTDPQ TVAARQRRER ISEKIRVLQT
301: LVPGGTKMDT ASMLDEAANY LKFLRAQVKA LENLRPKLDQ TNLSFSSAPT SFPLFHPSFL PLQNPNQIHH PEC
101: TSTEDDEGIS VLFSDCQTLW SFGGVSSAES ENREITTETT TTIKPKPLKR NRGGDGGTTE TTTTTTKPKS LKRNRGDETG SHFSLVHPQD DSEKGGFKLI
201: YDENQSKSKK PRTEKERGGS SNISFQHSTC LSDNVEPDAE AIAQMKEMIY RAAAFRPVNF GLEIVEKPKR KNVKISTDPQ TVAARQRRER ISEKIRVLQT
301: LVPGGTKMDT ASMLDEAANY LKFLRAQVKA LENLRPKLDQ TNLSFSSAPT SFPLFHPSFL PLQNPNQIHH PEC
Arabidopsis Description
BHLH87Transcription factor bHLH87 [Source:UniProtKB/Swiss-Prot;Acc:Q8S3D2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.