Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3D01G252700.1 | Wheat | nucleus | 93.95 | 92.49 |
| TraesCS3A01G252200.1 | Wheat | nucleus | 93.68 | 92.23 |
| HORVU3Hr1G066600.2 | Barley | nucleus | 89.74 | 84.2 |
| Os01t0707500-01 | Rice | nucleus | 62.89 | 60.81 |
| KXG33221 | Sorghum | nucleus | 60.79 | 55.26 |
| GSMUA_Achr1P14400_001 | Banana | nucleus | 24.21 | 55.09 |
| Zm00001d043699_P001 | Maize | nucleus | 58.42 | 52.61 |
| GSMUA_AchrUn_... | Banana | nucleus | 30.26 | 42.12 |
| TraesCS1B01G380000.1 | Wheat | nucleus | 39.74 | 37.94 |
| CDY32423 | Canola | nucleus | 27.11 | 31.21 |
| Bra001826.1-P | Field mustard | nucleus | 26.32 | 30.86 |
| CDY51449 | Canola | nucleus | 26.84 | 30.72 |
| Bra031275.1-P | Field mustard | nucleus | 26.84 | 30.72 |
| CDY62045 | Canola | nucleus | 26.84 | 30.45 |
| TraesCS7B01G074900.1 | Wheat | nucleus | 14.74 | 30.43 |
| TraesCS7B01G160500.1 | Wheat | nucleus | 17.63 | 30.32 |
| TraesCS5B01G235200.1 | Wheat | nucleus | 18.68 | 30.21 |
| CDY48884 | Canola | nucleus | 25.79 | 29.25 |
| PGSC0003DMT400006453 | Potato | nucleus | 29.47 | 29.02 |
| Solyc03g121240.1.1 | Tomato | nucleus | 28.42 | 28.42 |
| AT3G21330.1 | Thale cress | nucleus | 26.58 | 27.08 |
| KRH09982 | Soybean | nucleus | 30.0 | 25.62 |
| KRH23349 | Soybean | nucleus | 30.0 | 25.33 |
| VIT_09s0002g02700.t01 | Wine grape | nucleus | 31.32 | 25.27 |
| KRH47179 | Soybean | nucleus | 28.16 | 24.83 |
| TraesCS3B01G233700.2 | Wheat | extracellular, mitochondrion, nucleus, plastid | 30.26 | 24.52 |
| KRH44227 | Soybean | nucleus | 28.42 | 24.38 |
| TraesCS3B01G383000.1 | Wheat | nucleus | 12.63 | 22.64 |
| TraesCS7B01G223900.1 | Wheat | nucleus | 17.63 | 20.87 |
| TraesCS1B01G359000.1 | Wheat | nucleus | 10.0 | 20.43 |
| TraesCS5B01G406100.1 | Wheat | nucleus | 12.63 | 17.45 |
| TraesCS5B01G074500.1 | Wheat | nucleus | 12.89 | 16.9 |
| TraesCS6B01G303600.1 | Wheat | cytosol, nucleus, plastid | 12.11 | 16.2 |
| TraesCS6B01G303500.1 | Wheat | nucleus | 12.11 | 16.08 |
| TraesCS3B01G474700.1 | Wheat | nucleus | 10.26 | 15.35 |
| TraesCS3B01G010400.1 | Wheat | nucleus | 11.05 | 15.33 |
| TraesCS3B01G007700.1 | Wheat | nucleus | 11.05 | 15.33 |
| TraesCS7B01G195800.1 | Wheat | nucleus | 11.58 | 15.07 |
| TraesCS2B01G212700.1 | Wheat | nucleus | 11.58 | 14.57 |
| TraesCS4B01G080700.1 | Wheat | nucleus | 11.84 | 14.42 |
| TraesCS4B01G257200.1 | Wheat | nucleus | 12.11 | 13.9 |
Protein Annotations
| EnsemblPlants:TraesCS3B01G281600.1 | EnsemblPlantsGene:TraesCS3B01G281600 | Gene3D:4.10.280.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | InterPro:bHLH_dom | PANTHER:PTHR12565 |
| PANTHER:PTHR12565:SF288 | PFscan:PS50888 | SEG:seg | SMART:SM00353 | SUPFAM:SSF47459 | TIGR:cd00083 |
| MapMan:15.5.32 | : | : | : | : | : |
Description
No Description!
Coordinates
chr3B:+:452462243..452463580
Molecular Weight (calculated)
39483.0 Da
IEP (calculated)
8.214
GRAVY (calculated)
-0.284
Length
380 amino acids
Sequence
(BLAST)
(BLAST)
001: MVTFGWSGPG LHDDAYLPRP VNQLSCGRFD LDDAFLRQLQ CDFGGGGQVS SSYGAAVGGA AANNGALGFF GSEVDVFSSV VDGASAHYGL LDSALAFSRV
101: LPCGGEGDPG AVSNGAMFSG YSGTTVCNIS SGESNNYSSG GGGHDVTEVA SPTSTISPTT TSHPTITSSA QQALHANRKL PADDCAAPLP HAGTKRKAPT
201: TTATSITFGQ DTNAGAAGEY KPDMEAMAQV KEMIYRAAAM RPVNLVTEPT AAGSIKPRRK NVRISSDPQT VAARLRRERV SDRLRVLQKL VPGGSKMDTA
301: SMLDEAASYL KFLKSQVQAL ETLGTTSSTG ASAAAVASTG RLHSQQHYYS NNPGFLGFAR NNNNISSVFR NPNGNSARLL
101: LPCGGEGDPG AVSNGAMFSG YSGTTVCNIS SGESNNYSSG GGGHDVTEVA SPTSTISPTT TSHPTITSSA QQALHANRKL PADDCAAPLP HAGTKRKAPT
201: TTATSITFGQ DTNAGAAGEY KPDMEAMAQV KEMIYRAAAM RPVNLVTEPT AAGSIKPRRK NVRISSDPQT VAARLRRERV SDRLRVLQKL VPGGSKMDTA
301: SMLDEAASYL KFLKSQVQAL ETLGTTSSTG ASAAAVASTG RLHSQQHYYS NNPGFLGFAR NNNNISSVFR NPNGNSARLL
001: MENGMYKKKG VCDSCVSSKS RSNHSPKRSM MEPQPHHLLM DWNKANDLLT QEHAAFLNDP HHLMLDPPPE TLIHLDEDEE YDEDMDAMKE MQYMIAVMQP
101: VDIDPATVPK PNRRNVRISD DPQTVVARRR RERISEKIRI LKRIVPGGAK MDTASMLDEA IRYTKFLKRQ VRILQPHSQI GAPMANPSYL CYYHNSQP
101: VDIDPATVPK PNRRNVRISD DPQTVVARRR RERISEKIRI LKRIVPGGAK MDTASMLDEA IRYTKFLKRQ VRILQPHSQI GAPMANPSYL CYYHNSQP
Arabidopsis Description
INDTranscription factor IND [Source:UniProtKB/Swiss-Prot;Acc:O81313]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.