Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3A01G440600.1 | Wheat | nucleus | 94.88 | 94.88 |
| TraesCS3D01G433200.1 | Wheat | nucleus | 94.49 | 94.12 |
| TraesCS1B01G359000.1 | Wheat | nucleus | 37.01 | 50.54 |
| Os11t0634700-00 | Rice | extracellular | 62.6 | 44.29 |
| OQU83893 | Sorghum | nucleus | 40.94 | 42.98 |
| Zm00001d048786_P001 | Maize | nucleus, plastid | 35.04 | 38.2 |
| CDX90106 | Canola | nucleus | 29.92 | 35.68 |
| CDY03948 | Canola | cytosol | 20.08 | 35.17 |
| CDY15706 | Canola | nucleus | 28.35 | 33.96 |
| GSMUA_Achr6P07760_001 | Banana | nucleus | 38.19 | 33.8 |
| TraesCS5B01G406100.1 | Wheat | nucleus | 35.43 | 32.73 |
| AT5G43175.1 | Thale cress | nucleus | 27.95 | 31.84 |
| AT1G27740.1 | Thale cress | nucleus | 32.28 | 31.78 |
| Bra010921.1-P | Field mustard | nucleus | 31.89 | 31.64 |
| CDY11768 | Canola | nucleus | 31.89 | 31.64 |
| TraesCS5B01G074500.1 | Wheat | nucleus | 35.83 | 31.38 |
| CDY27630 | Canola | nucleus | 29.13 | 30.58 |
| CDX84906 | Canola | nucleus | 29.13 | 30.33 |
| Bra032846.1-P | Field mustard | nucleus | 29.13 | 30.33 |
| TraesCS4B01G080700.1 | Wheat | nucleus | 37.01 | 30.13 |
| Bra030063.1-P | Field mustard | nucleus | 29.92 | 29.8 |
| CDY11802 | Canola | nucleus | 26.38 | 29.13 |
| TraesCS2B01G212700.1 | Wheat | nucleus | 34.25 | 28.81 |
| TraesCS4B01G257200.1 | Wheat | nucleus | 36.61 | 28.1 |
| TraesCS7B01G074900.1 | Wheat | nucleus | 14.57 | 20.11 |
| TraesCS3B01G007700.1 | Wheat | nucleus | 21.26 | 19.71 |
| TraesCS3B01G010400.1 | Wheat | nucleus | 21.26 | 19.71 |
| TraesCS6B01G303500.1 | Wheat | nucleus | 20.87 | 18.53 |
| TraesCS6B01G303600.1 | Wheat | cytosol, nucleus, plastid | 20.47 | 18.31 |
| TraesCS5B01G235200.1 | Wheat | nucleus | 16.54 | 17.87 |
| TraesCS7B01G160500.1 | Wheat | nucleus | 15.35 | 17.65 |
| TraesCS7B01G195800.1 | Wheat | nucleus | 20.08 | 17.47 |
| TraesCS3B01G383000.1 | Wheat | nucleus | 13.39 | 16.04 |
| TraesCS7B01G223900.1 | Wheat | nucleus | 16.54 | 13.08 |
| TraesCS3B01G233700.2 | Wheat | extracellular, mitochondrion, nucleus, plastid | 19.29 | 10.45 |
| TraesCS1B01G380000.1 | Wheat | nucleus | 16.14 | 10.3 |
| TraesCS3B01G281600.1 | Wheat | nucleus | 15.35 | 10.26 |
| CDY03946 | Canola | nucleus | 11.02 | 10.18 |
Protein Annotations
| EnsemblPlants:TraesCS3B01G474700.1 | EnsemblPlantsGene:TraesCS3B01G474700 | Gene3D:4.10.280.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | InterPro:bHLH_dom | PANTHER:PTHR16223 |
| PANTHER:PTHR16223:SF99 | PFAM:PF00010 | PFscan:PS50888 | SEG:seg | SMART:SM00353 | SUPFAM:SSF47459 |
| TIGR:cd00083 | MapMan:15.5.32 | : | : | : | : |
Description
No Description!
Coordinates
chr3B:+:723499786..723501369
Molecular Weight (calculated)
28142.0 Da
IEP (calculated)
5.843
GRAVY (calculated)
-0.442
Length
254 amino acids
Sequence
(BLAST)
(BLAST)
001: MEAKCAAIWS SVDGRSEESE MIAHLQSMFW SNSDAAVNLC SPSTSANSCV AASTVHSNLF LPLDMESHIT TPMVNTGMDL CFDHRHQTVT GHKRTSHMDE
101: QIKRTSQKSR TVPSVSDALC LSLADNETNG DTVNQSSSSC CSSEEDSIAA SEESFVPNQG DNSRGCRRPS KNLQSLYAKR RRERINEKLR VLQHLIPNGT
201: KVDISTMLEE AVQYVKFLQL QIKVLSSDET WMYAPLAYNG MDISLSLRIT AAQE
101: QIKRTSQKSR TVPSVSDALC LSLADNETNG DTVNQSSSSC CSSEEDSIAA SEESFVPNQG DNSRGCRRPS KNLQSLYAKR RRERINEKLR VLQHLIPNGT
201: KVDISTMLEE AVQYVKFLQL QIKVLSSDET WMYAPLAYNG MDISLSLRIT AAQE
001: MEAMGEWSTG LGGIYTEEAD FMNQLLASYE QPCGGSSSET TATLTAYHHQ GSQWNGGFCF SQESSSYSGY CAAMPRQEED NNGMEDATIN TNLYLVGEET
101: SECDATEYSG KSLLPLETVA ENHDHSMLQP ENSLTTTTDE KMFNQCESSK KRTRATTTDK NKRANKARRS QKCVEMSGEN ENSGEEEYTE KAAGKRKTKP
201: LKPQKTCCSD DESNGGDTFL SKEDGEDSKA LNLNGKTRAS RGAATDPQSL YARKRRERIN ERLRILQHLV PNGTKVDIST MLEEAVQYVK FLQLQIKLLS
301: SDDLWMYAPI AYNGMDIGLD LKLNALTR
101: SECDATEYSG KSLLPLETVA ENHDHSMLQP ENSLTTTTDE KMFNQCESSK KRTRATTTDK NKRANKARRS QKCVEMSGEN ENSGEEEYTE KAAGKRKTKP
201: LKPQKTCCSD DESNGGDTFL SKEDGEDSKA LNLNGKTRAS RGAATDPQSL YARKRRERIN ERLRILQHLV PNGTKVDIST MLEEAVQYVK FLQLQIKLLS
301: SDDLWMYAPI AYNGMDIGLD LKLNALTR
Arabidopsis Description
Basic helix-loop-helix (BHLH) DNA-binding superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4IGG9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.