Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY27630 | Canola | nucleus | 98.36 | 99.17 |
| CDX84906 | Canola | nucleus | 97.54 | 97.54 |
| Bra010921.1-P | Field mustard | nucleus | 89.34 | 85.16 |
| AT1G27740.1 | Thale cress | nucleus | 88.52 | 83.72 |
| Bra030063.1-P | Field mustard | nucleus | 82.79 | 79.22 |
| HORVU1Hr1G043780.1 | Barley | mitochondrion, nucleus | 15.16 | 61.67 |
| GSMUA_Achr4P23240_001 | Banana | nucleus | 30.33 | 50.68 |
| TraesCS1B01G359000.1 | Wheat | nucleus | 29.51 | 38.71 |
| TraesCS1D01G347900.1 | Wheat | nucleus | 29.1 | 38.17 |
| TraesCS1A01G345200.1 | Wheat | nucleus | 28.69 | 37.63 |
| OQU83893 | Sorghum | nucleus | 31.15 | 31.41 |
| EER93400 | Sorghum | nucleus | 36.89 | 30.82 |
| GSMUA_Achr9P09600_001 | Banana | nucleus | 34.43 | 30.43 |
| TraesCS5B01G406100.1 | Wheat | nucleus | 33.61 | 29.82 |
| Zm00001d048786_P001 | Maize | nucleus, plastid | 28.28 | 29.61 |
| TraesCS3A01G440600.1 | Wheat | nucleus | 30.74 | 29.53 |
| TraesCS3D01G433200.1 | Wheat | nucleus | 30.74 | 29.41 |
| GSMUA_Achr6P07760_001 | Banana | nucleus | 34.43 | 29.27 |
| TraesCS3B01G474700.1 | Wheat | nucleus | 30.33 | 29.13 |
| TraesCS5A01G401300.1 | Wheat | nucleus | 33.61 | 28.37 |
| TraesCS5D01G411600.1 | Wheat | nucleus | 34.02 | 27.67 |
| Bra039819.1-P | Field mustard | nucleus | 38.93 | 27.46 |
| Bra034587.1-P | Field mustard | nucleus | 38.93 | 27.46 |
| HORVU5Hr1G097520.1 | Barley | nucleus | 32.38 | 27.05 |
| Bra011476.1-P | Field mustard | nucleus | 37.7 | 26.51 |
| Bra036969.1-P | Field mustard | nucleus | 37.7 | 26.29 |
| Os11t0634700-00 | Rice | extracellular | 35.66 | 24.23 |
| Bra037128.1-P | Field mustard | cytoskeleton, cytosol, nucleus | 18.03 | 21.46 |
| Bra036071.1-P | Field mustard | nucleus | 18.03 | 20.66 |
| Bra012128.1-P | Field mustard | nucleus | 18.44 | 20.55 |
| Bra028895.1-P | Field mustard | nucleus, plastid | 14.34 | 19.77 |
| Bra030002.1-P | Field mustard | nucleus | 18.03 | 19.13 |
| Bra036801.1-P | Field mustard | nucleus | 17.62 | 18.61 |
| Bra019708.1-P | Field mustard | nucleus | 22.95 | 18.24 |
| Bra028620.1-P | Field mustard | nucleus | 15.98 | 18.22 |
| Bra000979.1-P | Field mustard | cytosol | 12.3 | 16.22 |
| Bra004169.1-P | Field mustard | nucleus | 16.8 | 15.3 |
| Bra001826.1-P | Field mustard | nucleus | 16.8 | 12.65 |
| Bra031275.1-P | Field mustard | nucleus | 17.21 | 12.65 |
| HORVU6Hr1G069690.3 | Barley | cytosol | 11.07 | 8.01 |
Protein Annotations
| EnsemblPlants:Bra032846.1 | EnsemblPlants:Bra032846.1-P | EnsemblPlantsGene:Bra032846 | Gene3D:4.10.280.10 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | InterPro:bHLH_dom |
| PANTHER:PTHR16223 | PANTHER:PTHR16223:SF105 | PFAM:PF00010 | PFscan:PS50888 | SEG:seg | SMART:SM00353 |
| SUPFAM:SSF47459 | UniParc:UPI0002542583 | UniProt:M4EVL3 | MapMan:15.5.32 | : | : |
Description
AT1G27740 (E=4e-056) | basic helix-loop-helix (bHLH) family protein
Coordinates
chrA09:-:12437696..12438723
Molecular Weight (calculated)
27797.0 Da
IEP (calculated)
6.423
GRAVY (calculated)
-0.658
Length
244 amino acids
Sequence
(BLAST)
(BLAST)
001: MDVFVDGELE SLLGMFNFDQ CSSSKEERPR DEMLGLASLY NDHLHHQNNL PPSDHHALLN PDMFPFSAMI MGGNLPTMLD SWDQNQLQET ATLKRKQLNV
101: DNLHNSNFNC DVTRQELVKA KKKQRVSQES NTVDESNSSD DEKASVTSVK GKTRATKGTA TDPQSLYARK RREKINERLK TLQNLVPNGT KVDISTMLEE
201: AVHYVKFLQL QIKLLSSDDL WMYAPLAYNG LDMGFHHNLL SRLM
101: DNLHNSNFNC DVTRQELVKA KKKQRVSQES NTVDESNSSD DEKASVTSVK GKTRATKGTA TDPQSLYARK RREKINERLK TLQNLVPNGT KVDISTMLEE
201: AVHYVKFLQL QIKLLSSDDL WMYAPLAYNG LDMGFHHNLL SRLM
001: MDVFVDGELE SLLGMFNFDQ CSSSKEERPR DELLGLSSLY NGHLHQHQHH NNVLSSDHHA FLLPDMFPFG AMPGGNLPAM LDSWDQSHHL QETSSLKRKL
101: LDVENLCKTN SNCDVTRQEL AKSKKKQRVS SESNTVDESN TNWVDGQSLS NSSDDEKASV TSVKGKTRAT KGTATDPQSL YARKRREKIN ERLKTLQNLV
201: PNGTKVDIST MLEEAVHYVK FLQLQIKLLS SDDLWMYAPL AYNGLDMGFH HNLLSRLM
101: LDVENLCKTN SNCDVTRQEL AKSKKKQRVS SESNTVDESN TNWVDGQSLS NSSDDEKASV TSVKGKTRAT KGTATDPQSL YARKRREKIN ERLKTLQNLV
201: PNGTKVDIST MLEEAVHYVK FLQLQIKLLS SDDLWMYAPL AYNGLDMGFH HNLLSRLM
Arabidopsis Description
BHLH54Transcription factor bHLH54 [Source:UniProtKB/Swiss-Prot;Acc:Q8LEG1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.