Factsheet for Bra011476.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX69011	Canola	nucleus	94.81	94.81
Bra036969.1-P	Field mustard	nucleus	86.46	85.71
Bra034587.1-P	Field mustard	nucleus	82.13	82.37
Bra039819.1-P	Field mustard	nucleus	57.35	57.51
PGSC0003DMT400008370	Potato	nucleus	28.24	49.49
Solyc10g049720.1.1	Tomato	nucleus	36.31	42.28
PGSC0003DMT400089728	Potato	nucleus	36.89	41.97
Solyc10g049780.1.1	Tomato	nucleus	32.85	41.91
VIT_03s0091g00730.t01	Wine grape	nucleus	40.63	40.29
PGSC0003DMT400087143	Potato	nucleus	37.18	38.74
GSMUA_Achr2P17130_001	Banana	nucleus	35.16	38.61
Solyc01g107140.1.1	Tomato	nucleus	36.31	38.18
EER99632	Sorghum	nucleus	30.84	37.94
Bra032846.1-P	Field mustard	nucleus	26.51	37.7
KRG91108	Soybean	nucleus	38.04	37.39
Os07t0588400-00	Rice	nucleus	31.7	37.29
Zm00001d021988_P001	Maize	nucleus	31.12	36.61
Zm00001d006733_P001	Maize	nucleus	29.97	36.36
Bra010921.1-P	Field mustard	nucleus	26.8	36.33
KRH35668	Soybean	nucleus	36.6	36.08
Bra030063.1-P	Field mustard	nucleus	25.94	35.29
KRH35669	Soybean	nucleus	35.45	34.36
KRH15444	Soybean	nucleus	34.58	34.29
KRH05600	Soybean	nucleus	33.72	33.14
KRG91107	Soybean	nucleus	34.01	32.96
Bra000979.1-P	Field mustard	cytosol	11.24	21.08
Bra028620.1-P	Field mustard	nucleus	12.97	21.03
Bra037128.1-P	Field mustard	cytoskeleton, cytosol, nucleus	12.39	20.98
Bra028895.1-P	Field mustard	nucleus, plastid	10.66	20.9
Bra012128.1-P	Field mustard	nucleus	12.97	20.55
Bra036071.1-P	Field mustard	nucleus	12.39	20.19
Bra036801.1-P	Field mustard	nucleus	12.97	19.48
Bra019708.1-P	Field mustard	nucleus	17.0	19.22
Bra030002.1-P	Field mustard	nucleus	12.39	18.7
Bra004169.1-P	Field mustard	nucleus	12.97	16.79
Bra031275.1-P	Field mustard	nucleus	15.56	16.27
Bra001826.1-P	Field mustard	nucleus	14.7	15.74

Protein Annotations

EnsemblPlants:Bra011476.1	EnsemblPlants:Bra011476.1-P	EnsemblPlantsGene:Bra011476	Gene3D:4.10.280.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	InterPro:bHLH_dom
PANTHER:PTHR16223	PANTHER:PTHR16223:SF105	PFAM:PF00010	PFscan:PS50888	SEG:seg	SMART:SM00353
SUPFAM:SSF47459	UniParc:UPI0002545ABB	UniProt:M4D4S1	MapMan:15.5.32	:	:

Description

AT4G33880 (E=4e-131) | basic helix-loop-helix (bHLH) family protein

Coordinates

chrA01:+:2024726..2026313

Molecular Weight (calculated)

38221.0 Da

IEP (calculated)

4.712

GRAVY (calculated)

-0.823

Length

347 amino acids

Sequence
(BLAST)

001: MEAMGEWSNN LGGMYTYATE ETDFMNQLLA SYDHPGTGSS SGTAGGDQQG LYWSLGSNHS HLSLMPEASS FGFSGESSSY SVADSRYYTV VPPTVEETNN
101: GSLGFGMEDA TVNTNSYLVG EETSECDVEK YSSGKTLLPL ETVVENHDDG ESMLQSETTT DYHRSLAGSK KRSRATSTDK NKRSKVGKRG QKGIEMTCDN
201: NNRGEEEEGE KVKRRKSGAM MSRQNSSTTF CSEEESQCPS QDVGGEEDED ASKALNLNGK TRASRGAATD PQSLYARKRR ERINERLRIL QNLVPNGTKV
301: DISTMLEEAV HYVKFLQLQI KLLSSDDQWM YAPIAFNGMD IGLNLPR

Best Arabidopsis Sequence Match ( AT4G33880.1 )
(BLAST)

001: MEAMGEWSNN LGGMYTYATE EADFMNQLLA SYDHPGTGSS SGAAASGDHQ GLYWNLGSHH NHLSLVSEAG SFCFSQESSS YSAGNSGYYT VVPPTVEENQ
101: NETMDFGMED VTINTNSYLV GEETSECDVE KYSSGKTLMP LETVVENHDD EESLLQSEIS VTTTKSLTGS KKRSRATSTD KNKRARVNKR AQKNVEMSGD
201: NNEGEEEEGE TKLKKRKNGA MMSRQNSSTT FCTEEESNCA DQDGGGEDSS SKEDDPSKAL NLNGKTRASR GAATDPQSLY ARKRRERINE RLRILQNLVP
301: NGTKVDISTM LEEAVHYVKF LQLQIKLLSS DDLWMYAPIA FNGMDIGLSS PR

Arabidopsis Description

BHLH85Transcription factor bHLH85 [Source:UniProtKB/Swiss-Prot;Acc:Q84WK0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.