Factsheet for PGSC0003DMT400008370

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc10g049780.1.1	Tomato	nucleus	93.94	68.38
PGSC0003DMT400030165	Potato	nucleus	35.35	38.46
PGSC0003DMT400089728	Potato	nucleus	56.57	36.72
PGSC0003DMT400087143	Potato	nucleus	58.08	34.53
EER99632	Sorghum	nucleus	45.96	32.27
Zm00001d021988_P001	Maize	nucleus	46.97	31.53
Zm00001d006733_P001	Maize	nucleus	45.45	31.47
Os07t0588400-00	Rice	nucleus	46.46	31.19
GSMUA_Achr2P17130_001	Banana	nucleus	49.49	31.01
AT2G14760.3	Thale cress	nucleus	53.03	30.79
CDX81461	Canola	nucleus	51.01	29.19
Bra039819.1-P	Field mustard	nucleus	50.51	28.9
CDY37221	Canola	nucleus	50.51	28.9
AT4G33880.1	Thale cress	nucleus	51.01	28.69
Bra036969.1-P	Field mustard	nucleus	50.51	28.57
CDX69011	Canola	nucleus	50.0	28.53
KRG91108	Soybean	nucleus	50.51	28.33
CDX72435	Canola	nucleus	50.0	28.29
CDY49379	Canola	nucleus	50.0	28.29
CDX75386	Canola	nucleus	49.49	28.24
Bra011476.1-P	Field mustard	nucleus	49.49	28.24
KRH35668	Soybean	nucleus	50.0	28.12
Bra034587.1-P	Field mustard	nucleus	48.99	28.03
CDY28328	Canola	nucleus	50.0	27.81
PGSC0003DMT400055446	Potato	nucleus	47.47	26.04
PGSC0003DMT400048857	Potato	nucleus	19.19	25.68
CDY48431	Canola	nucleus	30.3	18.69
PGSC0003DMT400010344	Potato	nucleus	19.7	17.41
PGSC0003DMT400078776	Potato	nucleus	25.25	15.77
PGSC0003DMT400020558	Potato	nucleus	19.7	15.41
PGSC0003DMT400073760	Potato	nucleus	19.7	14.89
PGSC0003DMT400006453	Potato	nucleus	21.21	10.88
PGSC0003DMT400012487	Potato	nucleus	19.7	10.0

Protein Annotations

EnsemblPlants:PGSC0003DMT400008370	EnsemblPlantsGene:PGSC0003DMG400003231	Gene3D:4.10.280.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	InterPro:bHLH_dom	PANTHER:PTHR16223
PANTHER:PTHR16223:SF105	PFAM:PF00010	PFscan:PS50888	PGSC:PGSC0003DMG400003231	SMART:SM00353	SUPFAM:SSF47459
UniParc:UPI0002964D61	UniProt:M0ZUH1	MapMan:15.5.32	:	:	:

Description

Transcription factor [Source:PGSC_GENE;Acc:PGSC0003DMG400003231]

Coordinates

chr10:-:14297956..14299370

Molecular Weight (calculated)

22045.2 Da

IEP (calculated)

9.104

GRAVY (calculated)

-0.702

Length

198 amino acids

Sequence
(BLAST)

001: MVEGENTSSP SQVLANYNPI EVDDFLNQDV SNDSMESGEN KAKVLDSPPE SSKRKRSCNL LGDVPKNKRS VKLKKTSKMD GENKAALQRQ NSISCCSEDE
101: SINVPKSRAS RGSATDSQSL YARKRREKIN QRLRILQSLV PNGTKVDIST MLEEAVQYVK FLQLQIKLLS SDDLWMYAPI AYNGMDIGLD LKIGTPKS

Best Arabidopsis Sequence Match ( AT2G14760.1 )
(BLAST)

001: MEAMGEWSTG LGGIYTEEAD FMNQLLASYE QPCGGSSSET TATLTAYHHQ GSQWNGGFCF SQESSSYSGY CAAMPRQEED NNGMEDATIN TNLYLVGEET
101: SECDATEYSG KSLLPLETVA ENHDHSMLQP ENSLTTTTDE KMFNQCESSK KRTRATTTDK NKRANKARRS QKCVEMSGEN ENSGEEEYTE KAAGKRKTKP
201: LKPQKTCCSD DESNGGDTFL SKEDGEDSKA LNLNGKTRAS RGAATDPQSL YARKRRERIN ERLRILQHLV PNGTKVDIST MLEEAVQYVK FLQLQIKLLS
301: SDDLWMYAPI AYNGMDIGLD LKLNALTR

Arabidopsis Description

Basic helix-loop-helix (BHLH) DNA-binding superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4IGG9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.