Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra039819.1-P | Field mustard | nucleus | 75.95 | 74.86 |
| CDX81461 | Canola | nucleus | 75.66 | 74.57 |
| CDY37221 | Canola | nucleus | 75.07 | 73.99 |
| AT4G33880.1 | Thale cress | nucleus | 65.4 | 63.35 |
| PGSC0003DMT400008370 | Potato | nucleus | 30.79 | 53.03 |
| Solyc10g049780.1.1 | Tomato | nucleus | 34.9 | 43.75 |
| Solyc10g049720.1.1 | Tomato | nucleus | 36.66 | 41.95 |
| PGSC0003DMT400089728 | Potato | nucleus | 37.24 | 41.64 |
| VIT_03s0091g00730.t01 | Wine grape | nucleus | 40.47 | 39.43 |
| PGSC0003DMT400087143 | Potato | nucleus | 38.42 | 39.34 |
| GSMUA_Achr2P17130_001 | Banana | nucleus | 35.78 | 38.61 |
| Solyc01g107140.1.1 | Tomato | nucleus | 37.24 | 38.48 |
| AT5G43175.1 | Thale cress | nucleus | 24.34 | 37.22 |
| AT1G27740.1 | Thale cress | nucleus | 28.15 | 37.21 |
| KRG91108 | Soybean | nucleus | 37.83 | 36.54 |
| KRH35668 | Soybean | nucleus | 36.95 | 35.8 |
| EER99632 | Sorghum | nucleus | 29.33 | 35.46 |
| Os07t0588400-00 | Rice | nucleus | 30.21 | 34.92 |
| Zm00001d021988_P001 | Maize | nucleus | 30.21 | 34.92 |
| KRH35669 | Soybean | nucleus | 36.36 | 34.64 |
| Zm00001d006733_P001 | Maize | nucleus | 29.03 | 34.62 |
| KRH15444 | Soybean | nucleus | 35.48 | 34.57 |
| KRG91107 | Soybean | nucleus | 35.78 | 34.08 |
| KRH05600 | Soybean | nucleus | 34.31 | 33.14 |
| AT5G01305.1 | Thale cress | nucleus, plastid | 10.85 | 21.64 |
| AT4G00120.1 | Thale cress | nucleus | 12.32 | 21.21 |
| AT1G66470.1 | Thale cress | nucleus | 18.18 | 20.81 |
| AT5G09750.1 | Thale cress | nucleus | 13.2 | 20.09 |
| AT5G37800.1 | Thale cress | nucleus | 17.3 | 19.22 |
| AT3G50330.1 | Thale cress | nucleus | 12.02 | 17.75 |
| AT5G67060.1 | Thale cress | nucleus | 12.02 | 17.01 |
| AT3G21330.1 | Thale cress | nucleus | 14.37 | 13.14 |
Protein Annotations
| MapMan:15.5.32 | Gene3D:4.10.280.10 | EntrezGene:815964 | ProteinID:AEC06333.1 | ArrayExpress:AT2G14760 | EnsemblPlantsGene:AT2G14760 |
| RefSeq:AT2G14760 | TAIR:AT2G14760 | RefSeq:AT2G14760-TAIR-G | EnsemblPlants:AT2G14760.3 | TAIR:AT2G14760.3 | Unigene:At.40499 |
| UniProt:F4IGG9 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009555 | GO:GO:0009987 | GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 |
| InterPro:IPR036638 | RefSeq:NP_001189527.1 | PFAM:PF00010 | PFscan:PS50888 | PANTHER:PTHR16223 | PANTHER:PTHR16223:SF105 |
| SMART:SM00353 | SUPFAM:SSF47459 | UniParc:UPI0001E92CF2 | InterPro:bHLH_dom | SEG:seg | : |
Description
Basic helix-loop-helix (BHLH) DNA-binding superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4IGG9]
Coordinates
chr2:-:6321587..6323397
Molecular Weight (calculated)
38056.4 Da
IEP (calculated)
4.988
GRAVY (calculated)
-0.831
Length
341 amino acids
Sequence
(BLAST)
(BLAST)
001: MEAMGEWSTG LGGIYTEEAD FMNQLLASYE QPCGGSSSET TATLTAYHHQ GSQWNGGFCF SQESSSYSGY CAAMPRQEED NNGMEDATIN TNLYLVGEET
101: SECDATEYSG KSLLPLETVA ENHDHSMLQP ENSLTTTTDE KMFNQCESSK KRTRATTTDK NKRANKARRS QKCVEMSGEN ENSGEEEYTE KAAGKRKTKP
201: LKPQKTCCSD DESNGGDTFL SKEDGEDSKA LNLNGKTRAS RGAATDPQSL YARLKQLNKV HCMMVQKRRE RINERLRILQ HLVPNGTKVD ISTMLEEAVQ
301: YVKFLQLQIK LLSSDDLWMY APIAYNGMDI GLDLKLNALT R
101: SECDATEYSG KSLLPLETVA ENHDHSMLQP ENSLTTTTDE KMFNQCESSK KRTRATTTDK NKRANKARRS QKCVEMSGEN ENSGEEEYTE KAAGKRKTKP
201: LKPQKTCCSD DESNGGDTFL SKEDGEDSKA LNLNGKTRAS RGAATDPQSL YARLKQLNKV HCMMVQKRRE RINERLRILQ HLVPNGTKVD ISTMLEEAVQ
301: YVKFLQLQIK LLSSDDLWMY APIAYNGMDI GLDLKLNALT R
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.