Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY11694 | Canola | nucleus | 82.21 | 84.48 |
| CDX96145 | Canola | nucleus | 82.21 | 84.48 |
| CDX68049 | Canola | nucleus | 82.21 | 84.48 |
| CDY55674 | Canola | nucleus | 81.54 | 83.79 |
| Bra004169.1-P | Field mustard | nucleus | 75.17 | 83.58 |
| CDY61813 | Canola | nucleus | 84.9 | 82.95 |
| CDY58387 | Canola | nucleus | 85.23 | 82.74 |
| Bra019708.1-P | Field mustard | nucleus | 84.9 | 82.41 |
| GSMUA_Achr3P01250_001 | Banana | cytosol, nucleus, plastid | 28.52 | 70.25 |
| AT5G37800.1 | Thale cress | nucleus | 69.13 | 67.1 |
| KRH73015 | Soybean | nucleus | 40.6 | 41.02 |
| KRH15121 | Soybean | nucleus | 39.93 | 40.61 |
| Solyc02g091440.1.1 | Tomato | nucleus | 41.28 | 38.8 |
| Os02t0710300-01 | Rice | nucleus | 38.59 | 38.33 |
| TraesCS3B01G007700.1 | Wheat | nucleus | 35.23 | 38.32 |
| TraesCS3B01G010400.1 | Wheat | nucleus | 35.23 | 38.32 |
| PGSC0003DMT400078776 | Potato | nucleus | 40.27 | 37.85 |
| TraesCS3D01G004300.1 | Wheat | cytosol, nucleus, plastid | 34.9 | 37.82 |
| TraesCS3A01G006300.1 | Wheat | cytosol, nucleus, plastid | 34.56 | 37.59 |
| KRG97923 | Soybean | nucleus | 41.61 | 36.58 |
| KRH30960 | Soybean | nucleus | 41.28 | 36.28 |
| GSMUA_Achr10P... | Banana | nucleus | 36.24 | 36.24 |
| VIT_14s0006g01470.t01 | Wine grape | nucleus | 41.95 | 36.02 |
| EES07381 | Sorghum | nucleus | 36.24 | 35.29 |
| Zm00001d017804_P001 | Maize | nucleus | 34.56 | 34.92 |
| GSMUA_Achr2P22860_001 | Banana | nucleus | 37.25 | 34.47 |
| TraesCS6D01G256500.1 | Wheat | cytosol | 32.55 | 34.28 |
| TraesCS6B01G303500.1 | Wheat | nucleus | 32.89 | 34.27 |
| TraesCS6B01G303600.1 | Wheat | cytosol, nucleus, plastid | 32.55 | 34.15 |
| TraesCS6A01G276100.1 | Wheat | nucleus | 33.22 | 34.02 |
| TraesCS6D01G256600.1 | Wheat | nucleus | 32.89 | 33.91 |
| EES00435 | Sorghum | nucleus | 32.55 | 33.45 |
| TraesCS6A01G276200.1 | Wheat | cytosol, nucleus, plastid | 32.21 | 33.22 |
| TraesCS6D01G256300.1 | Wheat | nucleus | 32.55 | 32.99 |
| TraesCS7B01G195800.1 | Wheat | nucleus | 32.21 | 32.88 |
| TraesCS7D01G230600.1 | Wheat | nucleus | 31.54 | 32.87 |
| TraesCS7A01G229900.1 | Wheat | nucleus | 31.21 | 32.63 |
| TraesCS6D01G256400.1 | Wheat | nucleus | 29.53 | 32.0 |
| GSMUA_Achr6P09370_001 | Banana | nucleus | 36.24 | 31.86 |
| Os01t0111500-01 | Rice | nucleus | 31.21 | 31.53 |
| Zm00001d008444_P001 | Maize | nucleus | 34.23 | 31.38 |
| HORVU7Hr1G046580.1 | Barley | plasma membrane, vacuole | 31.88 | 28.7 |
| Os06t0496400-01 | Rice | nucleus | 26.51 | 26.87 |
| AT5G01305.1 | Thale cress | nucleus, plastid | 13.42 | 23.39 |
| AT5G43175.1 | Thale cress | nucleus | 17.45 | 23.32 |
| AT1G27740.1 | Thale cress | nucleus | 20.13 | 23.26 |
| AT5G09750.1 | Thale cress | nucleus | 14.09 | 18.75 |
| AT3G50330.1 | Thale cress | nucleus | 14.43 | 18.61 |
| AT5G67060.1 | Thale cress | nucleus | 14.77 | 18.26 |
| AT2G14760.3 | Thale cress | nucleus | 20.81 | 18.18 |
| AT4G33880.1 | Thale cress | nucleus | 20.47 | 17.33 |
| AT4G00120.1 | Thale cress | nucleus | 11.41 | 17.17 |
| AT3G21330.1 | Thale cress | nucleus | 15.1 | 12.06 |
Protein Annotations
| MapMan:15.5.32 | Gene3D:4.10.280.10 | EntrezGene:842965 | UniProt:A0A178W430 | ProteinID:AAG51154.1 | ProteinID:AEE34512.1 |
| EMBL:AF488615 | ArrayExpress:AT1G66470 | EnsemblPlantsGene:AT1G66470 | RefSeq:AT1G66470 | TAIR:AT1G66470 | RefSeq:AT1G66470-TAIR-G |
| EnsemblPlants:AT1G66470.1 | TAIR:AT1G66470.1 | EMBL:AY128310 | Unigene:At.35765 | EMBL:BT006320 | GO:GO:0001046 |
| GO:GO:0001228 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005737 |
| GO:GO:0005739 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0006366 | GO:GO:0007275 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009653 | GO:GO:0009987 | GO:GO:0016043 |
| GO:GO:0030154 | GO:GO:0045944 | GO:GO:0046983 | GO:GO:0048766 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 |
| InterPro:IPR036638 | RefSeq:NP_176820.1 | ProteinID:OAP12461.1 | PFAM:PF00010 | PO:PO:0000256 | PO:PO:0000262 |
| PO:PO:0009005 | PFscan:PS50888 | PANTHER:PTHR16223 | PANTHER:PTHR16223:SF19 | UniProt:Q9C707 | Symbol:RHD6 |
| SMART:SM00353 | SUPFAM:SSF47459 | UniParc:UPI00000A86D3 | InterPro:bHLH_dom | SEG:seg | : |
Description
BHLH83RHD6 [Source:UniProtKB/TrEMBL;Acc:A0A178W430]
Coordinates
chr1:+:24795214..24797015
Molecular Weight (calculated)
32089.8 Da
IEP (calculated)
6.746
GRAVY (calculated)
-0.767
Length
298 amino acids
Sequence
(BLAST)
(BLAST)
001: MALVNDHPNE TNYLSKQNSS SSEDLSSPGL DQPDAAYAGG GGGGGSASSS STMNSDHQQH QGFVFYPSGE DHHNSLMDFN GSSFLNFDHH ESFPPPAISC
101: GGSSGGGGFS FLEGNNMSYG FTNWNHQHHM DIISPRSTET PQGQKDWLYS DSTVVTTGSR NESLSPKSAG NKRSHTGEST QPSKKLSSGV TGKTKPKPTT
201: SPKDPQSLAA KNRRERISER LKILQELVPN GTKVDLVTML EKAISYVKFL QVQVKVLATD EFWPAQGGKA PDISQVKDAI DAILSSSQRD RNSNLITN
101: GGSSGGGGFS FLEGNNMSYG FTNWNHQHHM DIISPRSTET PQGQKDWLYS DSTVVTTGSR NESLSPKSAG NKRSHTGEST QPSKKLSSGV TGKTKPKPTT
201: SPKDPQSLAA KNRRERISER LKILQELVPN GTKVDLVTML EKAISYVKFL QVQVKVLATD EFWPAQGGKA PDISQVKDAI DAILSSSQRD RNSNLITN
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.