Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- plastid 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3B01G007700.1 | Wheat | nucleus | 96.35 | 96.35 |
| TraesCS3B01G010400.1 | Wheat | nucleus | 96.35 | 96.35 |
| TraesCS3D01G004300.1 | Wheat | cytosol, nucleus, plastid | 96.35 | 96.0 |
| GSMUA_Achr3P01250_001 | Banana | cytosol, nucleus, plastid | 28.47 | 64.46 |
| EES00435 | Sorghum | nucleus | 55.11 | 52.07 |
| Os01t0111500-01 | Rice | nucleus | 50.37 | 46.78 |
| Zm00001d008444_P001 | Maize | nucleus | 54.01 | 45.54 |
| GSMUA_Achr10P... | Banana | nucleus | 42.7 | 39.26 |
| TraesCS6A01G276100.1 | Wheat | nucleus | 41.61 | 39.18 |
| TraesCS6A01G276200.1 | Wheat | cytosol, nucleus, plastid | 40.15 | 38.06 |
| GSMUA_Achr2P22860_001 | Banana | nucleus | 43.43 | 36.96 |
| TraesCS7A01G229900.1 | Wheat | nucleus | 38.32 | 36.84 |
| CDY55674 | Canola | nucleus | 37.59 | 35.52 |
| CDY11694 | Canola | nucleus | 37.23 | 35.17 |
| CDX96145 | Canola | nucleus | 37.23 | 35.17 |
| CDX68049 | Canola | nucleus | 37.23 | 35.17 |
| VIT_14s0006g01470.t01 | Wine grape | nucleus | 43.8 | 34.58 |
| KRH73015 | Soybean | nucleus | 37.23 | 34.58 |
| AT1G66470.1 | Thale cress | nucleus | 37.59 | 34.56 |
| KRH15121 | Soybean | nucleus | 36.86 | 34.47 |
| PGSC0003DMT400078776 | Potato | nucleus | 39.78 | 34.38 |
| Solyc02g091440.1.1 | Tomato | nucleus | 39.42 | 34.07 |
| GSMUA_Achr6P09370_001 | Banana | nucleus | 41.97 | 33.92 |
| CDY61813 | Canola | nucleus | 36.5 | 32.79 |
| AT5G37800.1 | Thale cress | nucleus | 36.13 | 32.25 |
| Bra019708.1-P | Field mustard | nucleus | 35.77 | 31.92 |
| CDY58387 | Canola | nucleus | 35.77 | 31.92 |
| Bra004169.1-P | Field mustard | nucleus | 29.93 | 30.6 |
| KRG97923 | Soybean | nucleus | 37.59 | 30.38 |
| KRH30960 | Soybean | nucleus | 36.5 | 29.5 |
| TraesCS1A01G345200.1 | Wheat | nucleus | 18.98 | 27.96 |
| TraesCS3A01G440600.1 | Wheat | nucleus | 20.8 | 22.44 |
| TraesCS4A01G234500.1 | Wheat | nucleus | 25.18 | 22.12 |
| TraesCS5A01G067600.1 | Wheat | nucleus | 22.99 | 21.72 |
| TraesCS5A01G401300.1 | Wheat | nucleus | 21.17 | 20.07 |
| TraesCS2A01G194200.1 | Wheat | nucleus | 21.9 | 19.87 |
| TraesCS3A01G350600.1 | Wheat | nucleus | 14.96 | 19.34 |
| TraesCS7A01G262600.1 | Wheat | nucleus | 15.33 | 19.09 |
| TraesCS5A01G237500.1 | Wheat | nucleus | 16.06 | 18.72 |
| TraesCS6A01G142000.1 | Wheat | nucleus | 15.69 | 18.3 |
| TraesCS4A01G047700.1 | Wheat | nucleus | 21.9 | 18.24 |
| TraesCS7A01G169700.1 | Wheat | cytosol | 10.95 | 16.76 |
| TraesCS7A01G323000.1 | Wheat | nucleus | 14.6 | 12.78 |
| TraesCS3A01G252200.1 | Wheat | nucleus | 15.69 | 11.14 |
| TraesCS1A01G362800.1 | Wheat | nucleus | 16.06 | 11.14 |
| TraesCS3A01G207300.2 | Wheat | extracellular | 16.79 | 9.85 |
Protein Annotations
| EnsemblPlants:TraesCS3A01G006300.1 | EnsemblPlantsGene:TraesCS3A01G006300 | Gene3D:4.10.280.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | InterPro:bHLH_dom | PANTHER:PTHR16223 |
| PANTHER:PTHR16223:SF64 | PFAM:PF00010 | PFscan:PS50888 | SEG:seg | SMART:SM00353 | SUPFAM:SSF47459 |
| TIGR:cd00083 | MapMan:15.5.32 | : | : | : | : |
Description
No Description!
Coordinates
chr3A:-:7273460..7275146
Molecular Weight (calculated)
29140.2 Da
IEP (calculated)
5.736
GRAVY (calculated)
-0.405
Length
274 amino acids
Sequence
(BLAST)
(BLAST)
001: MACKRATTRE LRAMYDDEPS SMSLELFGYH GVVVDGDDEE GDTATALPQL SFVDNFKGGC GSAAADYYSW AYNASGGTPG ASSSSTSSVL SFEHAGGAGH
101: QLAYNSSTGD DDCALWMDTM ADQHGAAKFG FMNPGSADVV PEIQESSIKQ PAKSAQKRSS SGGEAQAAVK KQCGGGRKSK AKVVPTKDPQ SVVAKVRRER
201: ISERLKVLQD LVPNGTKVDM VTMLEKAITY VKFLQLQVKV LATDEFWPVQ GGKAPELSQV KTALDAILSS QQQP
101: QLAYNSSTGD DDCALWMDTM ADQHGAAKFG FMNPGSADVV PEIQESSIKQ PAKSAQKRSS SGGEAQAAVK KQCGGGRKSK AKVVPTKDPQ SVVAKVRRER
201: ISERLKVLQD LVPNGTKVDM VTMLEKAITY VKFLQLQVKV LATDEFWPVQ GGKAPELSQV KTALDAILSS QQQP
001: MALVNDHPNE TNYLSKQNSS SSEDLSSPGL DQPDAAYAGG GGGGGSASSS STMNSDHQQH QGFVFYPSGE DHHNSLMDFN GSSFLNFDHH ESFPPPAISC
101: GGSSGGGGFS FLEGNNMSYG FTNWNHQHHM DIISPRSTET PQGQKDWLYS DSTVVTTGSR NESLSPKSAG NKRSHTGEST QPSKKLSSGV TGKTKPKPTT
201: SPKDPQSLAA KNRRERISER LKILQELVPN GTKVDLVTML EKAISYVKFL QVQVKVLATD EFWPAQGGKA PDISQVKDAI DAILSSSQRD RNSNLITN
101: GGSSGGGGFS FLEGNNMSYG FTNWNHQHHM DIISPRSTET PQGQKDWLYS DSTVVTTGSR NESLSPKSAG NKRSHTGEST QPSKKLSSGV TGKTKPKPTT
201: SPKDPQSLAA KNRRERISER LKILQELVPN GTKVDLVTML EKAISYVKFL QVQVKVLATD EFWPAQGGKA PDISQVKDAI DAILSSSQRD RNSNLITN
Arabidopsis Description
BHLH83RHD6 [Source:UniProtKB/TrEMBL;Acc:A0A178W430]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.