Factsheet for TraesCS4A01G047700.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4D01G257100.1	Wheat	nucleus	97.26	96.68
TraesCS4B01G257200.1	Wheat	nucleus	96.35	95.77
HORVU4Hr1G069820.2	Barley	nucleus	94.53	94.53
Os03t0205300-00	Rice	nucleus	70.52	68.04
KXG39918	Sorghum	nucleus	53.19	54.35
Zm00001d028085_P001	Maize	nucleus	44.98	50.0
Zm00001d048141_P001	Maize	cytosol	44.68	46.52
TraesCS1A01G345200.1	Wheat	nucleus	25.53	45.16
TraesCS5A01G067600.1	Wheat	nucleus	33.43	37.93
TraesCS3A01G440600.1	Wheat	nucleus	28.57	37.01
TraesCS4A01G234500.1	Wheat	nucleus	34.04	35.9
TraesCS2A01G194200.1	Wheat	nucleus	31.61	34.44
TraesCS5A01G401300.1	Wheat	nucleus	29.79	33.91
TraesCS3A01G006300.1	Wheat	cytosol, nucleus, plastid	18.24	21.9
TraesCS6A01G276200.1	Wheat	cytosol, nucleus, plastid	17.33	19.72
TraesCS6A01G276100.1	Wheat	nucleus	17.02	19.24
TraesCS7A01G229900.1	Wheat	nucleus	16.41	18.95
TraesCS7A01G262600.1	Wheat	nucleus	12.46	18.64
TraesCS5A01G237500.1	Wheat	nucleus	12.77	17.87
TraesCS6A01G142000.1	Wheat	nucleus	12.77	17.87
TraesCS7A01G169700.1	Wheat	cytosol	9.12	16.76
TraesCS3A01G350600.1	Wheat	nucleus	10.64	16.51
TraesCS7A01G323000.1	Wheat	nucleus	13.07	13.74
TraesCS1A01G362800.1	Wheat	nucleus	13.98	11.65
TraesCS3A01G252200.1	Wheat	nucleus	13.37	11.4
TraesCS3A01G207300.2	Wheat	extracellular	14.29	10.06

Protein Annotations

EnsemblPlants:TraesCS4A01G047700.1	EnsemblPlantsGene:TraesCS4A01G047700	Gene3D:4.10.280.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	InterPro:bHLH_dom	PANTHER:PTHR16223
PANTHER:PTHR16223:SF9	PFAM:PF00010	PFscan:PS50888	SEG:seg	SMART:SM00353	SUPFAM:SSF47459
TIGR:cd00083	MapMan:15.5.32	:	:	:	:

Description

No Description!

Coordinates

chr4A:-:38717788..38719244

Molecular Weight (calculated)

35468.0 Da

IEP (calculated)

5.424

GRAVY (calculated)

-0.689

Length

329 amino acids

Sequence
(BLAST)

001: MEASEASWHS FDPSVAAEDS EEMARLLGVQ FFGNDQKQHP AAAPPSSMYW PGQEAADQYY TSAPYCMQMQ DHASAGAGYY SHGYYDGDAT AMAGNFFVAP
101: EEQIMADPAG FMVDLNLQFD DQDDGAGTSA AACKRKFGDQ NGTQSDAVTA PKKKARSTAP PVQRKGKSSA QPKKASKGSC SRGAQEESNG EATNNVQSSS
201: NYLSDEEGSL EMTSCSNMSS ASKKTSSSRG DHGGGAKARA GRGAATDPQS LYARKRREKI NERLKVLQNL IPNGTKVDIS TMLEEAVHYI KFMQLQIKLL
301: SSDDMWMFAP IAYNGFNVGL DLKIAPPQQ

Best Arabidopsis Sequence Match ( AT1G27740.1 )
(BLAST)

001: MDVFVDGELE SLLGMFNFDQ CSSSKEERPR DELLGLSSLY NGHLHQHQHH NNVLSSDHHA FLLPDMFPFG AMPGGNLPAM LDSWDQSHHL QETSSLKRKL
101: LDVENLCKTN SNCDVTRQEL AKSKKKQRVS SESNTVDESN TNWVDGQSLS NSSDDEKASV TSVKGKTRAT KGTATDPQSL YARKRREKIN ERLKTLQNLV
201: PNGTKVDIST MLEEAVHYVK FLQLQIKLLS SDDLWMYAPL AYNGLDMGFH HNLLSRLM

Arabidopsis Description

BHLH54Transcription factor bHLH54 [Source:UniProtKB/Swiss-Prot;Acc:Q8LEG1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.