Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1D01G347900.1 | Wheat | nucleus | 93.55 | 93.55 |
| TraesCS1B01G359000.1 | Wheat | nucleus | 89.78 | 89.78 |
| CDY03948 | Canola | cytosol | 27.42 | 35.17 |
| TraesCS3A01G440600.1 | Wheat | nucleus | 47.85 | 35.04 |
| CDX90106 | Canola | nucleus | 38.71 | 33.8 |
| CDY15706 | Canola | nucleus | 37.63 | 33.02 |
| CDY11768 | Canola | nucleus | 41.94 | 30.47 |
| AT1G27740.1 | Thale cress | nucleus | 41.94 | 30.23 |
| Bra010921.1-P | Field mustard | nucleus | 41.4 | 30.08 |
| Bra030063.1-P | Field mustard | nucleus | 40.86 | 29.8 |
| AT5G43175.1 | Thale cress | nucleus | 35.48 | 29.6 |
| CDY27630 | Canola | nucleus | 37.63 | 28.93 |
| CDX84906 | Canola | nucleus | 37.63 | 28.69 |
| Bra032846.1-P | Field mustard | nucleus | 37.63 | 28.69 |
| GSMUA_Achr6P07760_001 | Banana | nucleus | 43.55 | 28.22 |
| CDY11802 | Canola | nucleus | 33.87 | 27.39 |
| TraesCS5A01G401300.1 | Wheat | nucleus | 42.47 | 27.34 |
| TraesCS4A01G234500.1 | Wheat | nucleus | 45.16 | 26.92 |
| TraesCS5A01G067600.1 | Wheat | nucleus | 41.94 | 26.9 |
| TraesCS4A01G047700.1 | Wheat | nucleus | 45.16 | 25.53 |
| TraesCS2A01G194200.1 | Wheat | nucleus | 40.32 | 24.83 |
| TraesCS3A01G006300.1 | Wheat | cytosol, nucleus, plastid | 27.96 | 18.98 |
| TraesCS6A01G276100.1 | Wheat | nucleus | 29.03 | 18.56 |
| TraesCS6A01G276200.1 | Wheat | cytosol, nucleus, plastid | 27.96 | 17.99 |
| TraesCS7A01G169700.1 | Wheat | cytosol | 16.13 | 16.76 |
| TraesCS7A01G229900.1 | Wheat | nucleus | 23.12 | 15.09 |
| TraesCS3A01G350600.1 | Wheat | nucleus | 16.67 | 14.62 |
| TraesCS7A01G262600.1 | Wheat | nucleus | 17.2 | 14.55 |
| TraesCS5A01G237500.1 | Wheat | nucleus | 18.28 | 14.47 |
| TraesCS6A01G142000.1 | Wheat | nucleus | 18.28 | 14.47 |
| TraesCS7A01G323000.1 | Wheat | nucleus | 18.28 | 10.86 |
| TraesCS1A01G362800.1 | Wheat | nucleus | 22.58 | 10.63 |
| TraesCS3A01G252200.1 | Wheat | nucleus | 20.43 | 9.84 |
| CDY03946 | Canola | nucleus | 13.44 | 9.09 |
| TraesCS3A01G207300.2 | Wheat | extracellular | 19.35 | 7.71 |
| HORVU6Hr1G069690.3 | Barley | cytosol | 12.37 | 6.82 |
Protein Annotations
| EnsemblPlants:TraesCS1A01G345200.1 | EnsemblPlantsGene:TraesCS1A01G345200 | Gene3D:4.10.280.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | InterPro:bHLH_dom | PANTHER:PTHR16223 |
| PANTHER:PTHR16223:SF99 | PFAM:PF00010 | PFscan:PS50888 | SMART:SM00353 | SUPFAM:SSF47459 | TIGR:cd00083 |
| MapMan:15.5.32 | : | : | : | : | : |
Description
No Description!
Coordinates
chr1A:+:532672330..532673336
Molecular Weight (calculated)
20856.5 Da
IEP (calculated)
5.542
GRAVY (calculated)
-0.496
Length
186 amino acids
Sequence
(BLAST)
(BLAST)
001: MEAAECSSIW GSLDAICDES EMIAHLQSVL WCGSDSDANL CSSENDSTTA SFDLLVDDLG SANERNTGIK RKMQVDEQSD HHNEVPVALS TARKSGNKSR
101: AAMDSQSNYA KRRRHKINER LRVLQHLIPN GTKVDISTML EEAVQYVKFL HLQIKLLSSD EMWRYAPLAY DGVNIRLPHL DSLAHE
101: AAMDSQSNYA KRRRHKINER LRVLQHLIPN GTKVDISTML EEAVQYVKFL HLQIKLLSSD EMWRYAPLAY DGVNIRLPHL DSLAHE
001: MEAMGEWSTG LGGIYTEEAD FMNQLLASYE QPCGGSSSET TATLTAYHHQ GSQWNGGFCF SQESSSYSGY CAAMPRQEED NNGMEDATIN TNLYLVGEET
101: SECDATEYSG KSLLPLETVA ENHDHSMLQP ENSLTTTTDE KMFNQCESSK KRTRATTTDK NKRANKARRS QKCVEMSGEN ENSGEEEYTE KAAGKRKTKP
201: LKPQKTCCSD DESNGGDTFL SKEDGEDSKA LNLNGKTRAS RGAATDPQSL YARKRRERIN ERLRILQHLV PNGTKVDIST MLEEAVQYVK FLQLQIKLLS
301: SDDLWMYAPI AYNGMDIGLD LKLNALTR
101: SECDATEYSG KSLLPLETVA ENHDHSMLQP ENSLTTTTDE KMFNQCESSK KRTRATTTDK NKRANKARRS QKCVEMSGEN ENSGEEEYTE KAAGKRKTKP
201: LKPQKTCCSD DESNGGDTFL SKEDGEDSKA LNLNGKTRAS RGAATDPQSL YARKRRERIN ERLRILQHLV PNGTKVDIST MLEEAVQYVK FLQLQIKLLS
301: SDDLWMYAPI AYNGMDIGLD LKLNALTR
Arabidopsis Description
Basic helix-loop-helix (BHLH) DNA-binding superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4IGG9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.