Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX90106 | Canola | nucleus | 75.97 | 92.02 |
| Bra010921.1-P | Field mustard | nucleus | 88.76 | 89.45 |
| CDY11768 | Canola | nucleus | 88.37 | 89.06 |
| Bra032846.1-P | Field mustard | nucleus | 83.72 | 88.52 |
| CDY27630 | Canola | nucleus | 82.95 | 88.43 |
| CDX84906 | Canola | nucleus | 83.33 | 88.11 |
| CDY15706 | Canola | nucleus | 67.05 | 81.6 |
| Bra030063.1-P | Field mustard | nucleus | 79.46 | 80.39 |
| CDY11802 | Canola | nucleus | 67.44 | 75.65 |
| AT5G43175.1 | Thale cress | nucleus | 58.14 | 67.26 |
| HORVU1Hr1G043780.1 | Barley | mitochondrion, nucleus | 14.34 | 61.67 |
| GSMUA_Achr4P23240_001 | Banana | nucleus | 29.07 | 51.37 |
| CDY03948 | Canola | cytosol | 27.91 | 49.66 |
| CDY03946 | Canola | nucleus | 50.39 | 47.27 |
| TraesCS1D01G347900.1 | Wheat | nucleus | 30.62 | 42.47 |
| TraesCS1A01G345200.1 | Wheat | nucleus | 30.23 | 41.94 |
| TraesCS1B01G359000.1 | Wheat | nucleus | 30.23 | 41.94 |
| OQU83893 | Sorghum | nucleus | 31.01 | 33.06 |
| TraesCS3A01G440600.1 | Wheat | nucleus | 32.17 | 32.68 |
| TraesCS3B01G474700.1 | Wheat | nucleus | 31.78 | 32.28 |
| TraesCS3D01G433200.1 | Wheat | nucleus | 31.4 | 31.76 |
| GSMUA_Achr6P07760_001 | Banana | nucleus | 34.5 | 31.01 |
| Zm00001d048786_P001 | Maize | nucleus, plastid | 27.91 | 30.9 |
| EER93400 | Sorghum | nucleus | 34.88 | 30.82 |
| GSMUA_Achr9P09600_001 | Banana | nucleus | 32.95 | 30.8 |
| TraesCS5B01G406100.1 | Wheat | nucleus | 32.56 | 30.55 |
| AT4G33880.1 | Thale cress | nucleus | 40.31 | 29.55 |
| TraesCS5A01G401300.1 | Wheat | nucleus | 32.17 | 28.72 |
| TraesCS5D01G411600.1 | Wheat | nucleus | 32.95 | 28.33 |
| AT2G14760.3 | Thale cress | nucleus | 37.21 | 28.15 |
| HORVU5Hr1G097520.1 | Barley | nucleus | 31.01 | 27.4 |
| Os11t0634700-00 | Rice | extracellular | 35.27 | 25.35 |
| AT5G01305.1 | Thale cress | nucleus, plastid | 14.34 | 21.64 |
| AT1G66470.1 | Thale cress | nucleus | 23.26 | 20.13 |
| AT5G37800.1 | Thale cress | nucleus | 22.48 | 18.89 |
| AT5G09750.1 | Thale cress | nucleus | 16.28 | 18.75 |
| AT4G00120.1 | Thale cress | nucleus | 14.34 | 18.69 |
| AT3G50330.1 | Thale cress | nucleus | 16.28 | 18.18 |
| AT5G67060.1 | Thale cress | nucleus | 15.89 | 17.01 |
| AT3G21330.1 | Thale cress | nucleus | 15.5 | 10.72 |
| HORVU6Hr1G069690.3 | Barley | cytosol | 10.47 | 8.01 |
Protein Annotations
| MapMan:15.5.32 | Gene3D:4.10.280.10 | EntrezGene:839667 | UniProt:A0A178WM21 | ProteinID:AAF24948.1 | EMBL:AB493481 |
| ProteinID:AEE30871.1 | ArrayExpress:AT1G27740 | EnsemblPlantsGene:AT1G27740 | RefSeq:AT1G27740 | TAIR:AT1G27740 | RefSeq:AT1G27740-TAIR-G |
| EnsemblPlants:AT1G27740.1 | TAIR:AT1G27740.1 | EMBL:AY085436 | UniProt:C0SUX8 | GO:GO:0001046 | GO:GO:0001228 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 |
| GO:GO:0006355 | GO:GO:0006366 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009653 | GO:GO:0009719 | GO:GO:0009733 | GO:GO:0009987 | GO:GO:0016043 | GO:GO:0016049 |
| GO:GO:0030154 | GO:GO:0040007 | GO:GO:0045893 | GO:GO:0045944 | GO:GO:0046983 | GO:GO:0048766 |
| InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | RefSeq:NP_564293.1 | ProteinID:OAP19330.1 | PFAM:PF00010 |
| PO:PO:0000256 | PO:PO:0000262 | PO:PO:0007519 | PO:PO:0009005 | PFscan:PS50888 | PANTHER:PTHR16223 |
| PANTHER:PTHR16223:SF105 | UniProt:Q8LEG1 | Symbol:RSL4 | SMART:SM00353 | SUPFAM:SSF47459 | UniParc:UPI00000A715F |
| InterPro:bHLH_dom | SEG:seg | : | : | : | : |
Description
BHLH54Transcription factor bHLH54 [Source:UniProtKB/Swiss-Prot;Acc:Q8LEG1]
Coordinates
chr1:+:9654475..9656089
Molecular Weight (calculated)
29161.4 Da
IEP (calculated)
6.649
GRAVY (calculated)
-0.643
Length
258 amino acids
Sequence
(BLAST)
(BLAST)
001: MDVFVDGELE SLLGMFNFDQ CSSSKEERPR DELLGLSSLY NGHLHQHQHH NNVLSSDHHA FLLPDMFPFG AMPGGNLPAM LDSWDQSHHL QETSSLKRKL
101: LDVENLCKTN SNCDVTRQEL AKSKKKQRVS SESNTVDESN TNWVDGQSLS NSSDDEKASV TSVKGKTRAT KGTATDPQSL YARKRREKIN ERLKTLQNLV
201: PNGTKVDIST MLEEAVHYVK FLQLQIKLLS SDDLWMYAPL AYNGLDMGFH HNLLSRLM
101: LDVENLCKTN SNCDVTRQEL AKSKKKQRVS SESNTVDESN TNWVDGQSLS NSSDDEKASV TSVKGKTRAT KGTATDPQSL YARKRREKIN ERLKTLQNLV
201: PNGTKVDIST MLEEAVHYVK FLQLQIKLLS SDDLWMYAPL AYNGLDMGFH HNLLSRLM
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.